RNA id: TU1922990


Basic Information

Item Value
RNA id TU1922990
length 499
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1681062
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28470475 ~ 28470973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttatagtcgaaatccaacaagcttatgggccggaaggacgagcaggatagggggtccttgtccttttttagcaacactgtaatgcgagctgtgtgcattgagtctgggagaactccgtttttgcaaaaatcctccagcattggcatgaagatagggctgagctggggccaaaaagctttgtagaactctctggggaatccatctgggcctggggacttattaggtggcatggaggtaattgcctccaggatctcctcaggagtgaagggggagttgagatcttcctggtcggtctctgatagtttaggtagcgagattccctctaggaaagagtggagttctgcctctgtgtgttttctctcagaggtatatagtttgcagtaaaaatcatgaaaagttaaattgatcttttttgggtcatatgtgacctcgtcctctgctgttcggatagccatgattgtacgctctgactgctccttttttaattggtaagcaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922962 lncRNA upstream 26 28469161 ~ 28470449 (+) True G1681035
TU1922951 lncRNA upstream 62095 28408079 ~ 28408380 (+) True G1681025
TU1922602 lncRNA upstream 168894 28299343 ~ 28301581 (+) True G1680703
TU1922897 lncRNA upstream 193652 28276106 ~ 28276823 (+) True G1680975
TU1922891 lncRNA upstream 208359 28261837 ~ 28262116 (+) True G1680969
TU1922994 lncRNA downstream 3956 28474929 ~ 28475246 (+) True G1681066
TU1923020 lncRNA downstream 66851 28537824 ~ 28544583 (+) True G1681090
TU1923073 lncRNA downstream 166643 28637616 ~ 28638002 (+) True G1681137
TU1923100 lncRNA downstream 217719 28688692 ~ 28729427 (+) True G1681162
TU1923787 lncRNA downstream 306398 28777371 ~ 28777600 (+) True G1681791
XM_021576362.2 mRNA upstream 138657 28316489 ~ 28331818 (+) False abcg8
XM_021576364.2 mRNA upstream 138657 28316489 ~ 28331818 (+) True abcg8
XM_021576357.2 mRNA upstream 176787 28225916 ~ 28293688 (+) False cep170aa
XM_036956117.1 mRNA downstream 7827 28478800 ~ 28525093 (+) False ppm1ba
XM_036956118.1 mRNA downstream 7828 28478801 ~ 28525093 (+) False ppm1ba
XM_036956119.1 mRNA downstream 7828 28478801 ~ 28525093 (+) False ppm1ba
XM_036956121.1 mRNA downstream 7828 28478801 ~ 28525093 (+) False ppm1ba
XM_036956123.1 mRNA downstream 7829 28478802 ~ 28525093 (+) False ppm1ba
TU1922082 other upstream 1094656 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 1383012 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1694795 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1814364 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1837277 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 246388 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 307033 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 986255 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1101462 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1103785 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile