RNA id: TU1926914


Basic Information

Item Value
RNA id TU1926914
length 2501
lncRNA type intronic
GC content 0.47
exon number 6
gene id G1684590
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30989610 ~ 31044901 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacaatgcactgtgtctacggggagtagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacaatgcactgtgtctacagggagtagggagagataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacacaatgcactgtgtctacagggagtagggagagacaTAATGCaatgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtatacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggatacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggataCATAATGCAcggtgtctacagggagtagggagaaataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagacaTAATgtactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacaggaagtaaagagacataatgcactgtgtctacaggaagtaaagagacataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaagAGACATAAtacactgtgtctacagggagtaaagatacataatgcactgtgtctacagtgagtagggagacataatgcgctgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagcagggagacataatgcactgtgtctacagggagtagggagagacataatgcactgtgtctacagggagtagggagacacaatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaggtagacataatgcactgtatctacagggagtagggagagacataatgcactgtgtctacagggagtagggagagataATGCAcggtgtctacagggagtagggagagataatgcactgtgtctacagggagtagacagagacataatgcactgtgtctacagggagtagggagagataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagaagggagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtttACAGGGAGTAgagagacataatgcactgtgtctacagggagtaaagagacataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtagggagggacataatgcactgtgtctacagggagtagagagatataatgcactgtgtctacagggagtagggagacataatgcactgtgtctacagggagtaaacAGAGACATAATGCActgtgtctacagggagtagggagacatactgcactgtgtctacagggagtaaagagtcataatgcactgtgtccacagggagtagggagacataatgcactgtgtctacagggagtagggagagataatgcactgtgtctatagggagtagggagacataatgcactgtgtctacagggaggagggagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1926885 lncRNA downstream 63322 30936633 ~ 30956023 (-) True G1684565
TU1926838 lncRNA downstream 142542 30876510 ~ 30876803 (-) True G1684526
TU1926817 lncRNA downstream 183332 30835635 ~ 30836013 (-) True G1684507
TU1926814 lncRNA downstream 191726 30825799 ~ 30827619 (-) True G1684504
TU1926693 lncRNA downstream 381633 30637282 ~ 30637712 (-) True G1684390
TU1926989 lncRNA upstream 39172 31083748 ~ 31085290 (-) True G1684646
TU1927005 lncRNA upstream 55866 31100442 ~ 31100817 (-) True G1684657
TU1927055 lncRNA upstream 152539 31197115 ~ 31197863 (-) True G1684705
TU1927067 lncRNA upstream 173911 31218487 ~ 31255183 (-) True G1684715
TU1927137 lncRNA upstream 266179 31310755 ~ 31311415 (-) True G1684784
XM_036956177.1 mRNA downstream 185515 30608566 ~ 30833830 (-) False LOC110498787
XM_036956178.1 mRNA downstream 185515 30608566 ~ 30833830 (-) False LOC110498787
XM_036956179.1 mRNA downstream 185516 30608566 ~ 30833829 (-) False LOC110498787
XM_036956180.1 mRNA downstream 185516 30608566 ~ 30833829 (-) False LOC110498787
XM_036955549.1 mRNA downstream 710081 30271979 ~ 30309264 (-) True LOC110498786
XM_036956185.1 mRNA upstream 690280 31734856 ~ 31806658 (-) False LOC110499326
XM_036956186.1 mRNA upstream 690280 31734856 ~ 31806658 (-) False LOC110499326
XM_036956193.1 mRNA upstream 1098933 32143509 ~ 32225826 (-) False LOC110499330
XM_021576410.2 mRNA upstream 1098933 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA upstream 1098933 32143509 ~ 32226222 (-) True LOC110499330
TU1925354 other downstream 1473028 29541315 ~ 29546317 (-) False LOC110499315
TU1927010 other upstream 66979 31111555 ~ 31113686 (-) True G1684661
TU1927277 other upstream 363018 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 1767131 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 2033234 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 2489097 33533673 ~ 33534276 (-) True LOC110499358

Expression Profile