RNA id: TU1926989



Basic Information


Item Value
RNA id TU1926989
length 1273
lncRNA type intronic
GC content 0.54
exon number 2
gene id G1684646
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31083748 ~ 31085290 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTAATTAGAGtcaactaatggacaacaacacttaggcttctacttccagtttttacatactatatacattttacagacacagtacattttacatgtatttatcttttgtttgtttttagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccacccagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaatgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacacctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccagccttcaacTCCCCTCAacgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccatccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaatgcatcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacccctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacccctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaatgcatcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacccctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacccctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacctctcccatctgtctctgaacaccatccagtcccagccttcagctcccctcaatgcctcccatctatctctgaacaccatccagtcccagccttcagctcccctcaacccctcccatatgtctctgaacaccatccagtcccagccttcagcacCCCTCAacgcctcccatctatctctgaacaccatccagtcccagccttcagcacCCC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1926923 lncRNA downstream 38847 30989610 ~ 31044901 (-) False G1684590
TU1926914 lncRNA downstream 39172 31019345 ~ 31044576 (-) False G1684590
TU1926926 lncRNA downstream 44572 31019345 ~ 31039176 (-) True G1684590
TU1926885 lncRNA downstream 127725 30936633 ~ 30956023 (-) True G1684565
TU1926838 lncRNA downstream 206945 30876510 ~ 30876803 (-) True G1684526
TU1927005 lncRNA upstream 15152 31100442 ~ 31100817 (-) True G1684657
TU1927055 lncRNA upstream 111825 31197115 ~ 31197863 (-) True G1684705
TU1927067 lncRNA upstream 133197 31218487 ~ 31255183 (-) True G1684715
TU1927137 lncRNA upstream 225465 31310755 ~ 31311415 (-) True G1684784
TU1927138 lncRNA upstream 226314 31311604 ~ 31311813 (-) True G1684785
XM_036956177.1 mRNA downstream 249918 30608566 ~ 30833830 (-) False LOC110498787
XM_036956178.1 mRNA downstream 249918 30608566 ~ 30833830 (-) False LOC110498787
XM_036956179.1 mRNA downstream 249919 30608566 ~ 30833829 (-) False LOC110498787
XM_036956180.1 mRNA downstream 249919 30608566 ~ 30833829 (-) False LOC110498787
XM_036955549.1 mRNA downstream 774484 30271979 ~ 30309264 (-) True LOC110498786
XM_036956185.1 mRNA upstream 649566 31734856 ~ 31806658 (-) False LOC110499326
XM_036956186.1 mRNA upstream 649566 31734856 ~ 31806658 (-) False LOC110499326
XM_036956193.1 mRNA upstream 1058219 32143509 ~ 32225826 (-) False LOC110499330
XM_021576410.2 mRNA upstream 1058219 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA upstream 1058219 32143509 ~ 32226222 (-) True LOC110499330
TU1925354 other downstream 1537431 29541315 ~ 29546317 (-) False LOC110499315
TU1927010 other upstream 26265 31111555 ~ 31113686 (-) True G1684661
TU1927277 other upstream 322304 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 1726417 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 1992520 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 2448383 33533673 ~ 33534276 (-) True LOC110499358

Expression Profile


TU1926989 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU1926989 Expression in each Bioproject

Bar chart with 19 bars.
TU1926989 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.