RNA id: TU1927067


Basic Information

Item Value
RNA id TU1927067
length 359
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1684715
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31218487 ~ 31255183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttcacggttgggatggtgttcttgggcttgcaagcctccccctttttcctccaaacataatgatggtcattatggccaaacagttatatttttgtttcatcagaccataggacatttctccaaaaagtatgatctttgtccccatgtgcagttgcaaaccgtagtctggattttttatggcagttttggagcagtggcttcttttttgctgagcagcctttcaggttatgtcgatataggacttgttttactgtggacatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacttttcgcaccaaagtacgttcatct

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927055 lncRNA downstream 20624 31197115 ~ 31197863 (-) True G1684705
TU1927005 lncRNA downstream 117670 31100442 ~ 31100817 (-) True G1684657
TU1926989 lncRNA downstream 133197 31083748 ~ 31085290 (-) True G1684646
TU1926923 lncRNA downstream 173586 30989610 ~ 31044901 (-) False G1684590
TU1927137 lncRNA upstream 55572 31310755 ~ 31311415 (-) True G1684784
TU1927138 lncRNA upstream 56421 31311604 ~ 31311813 (-) True G1684785
TU1927185 lncRNA upstream 89610 31344793 ~ 31345097 (-) True G1684832
TU1927208 lncRNA upstream 110660 31365843 ~ 31366230 (-) True G1684855
TU1927218 lncRNA upstream 116184 31371367 ~ 31371656 (-) True G1684865
XM_036956167.1 mRNA downstream 53216 30608566 ~ 31165271 (-) False LOC110498787
XM_036956185.1 mRNA upstream 479673 31734856 ~ 31806658 (-) False LOC110499326
XM_036956186.1 mRNA upstream 479673 31734856 ~ 31806658 (-) False LOC110499326
XM_036956193.1 mRNA upstream 888326 32143509 ~ 32225826 (-) False LOC110499330
XM_021576410.2 mRNA upstream 888326 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA upstream 888326 32143509 ~ 32226222 (-) True LOC110499330
TU1927010 other downstream 104801 31111555 ~ 31113686 (-) True G1684661
TU1925344 other downstream 1672170 29541348 ~ 29546317 (-) False LOC110499315
TU1927277 other upstream 152411 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 1556524 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 1822627 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 2278490 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 2288503 33543686 ~ 33544238 (-) True G1687007

Expression Profile