RNA id: TU1927543


Basic Information

Item Value
RNA id TU1927543
length 321
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1685173
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31604587 ~ 31604907 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcagAGTTCTTTAAaagttccgtattgactgaccttcacttCTTAAataaatgatggactgtcgtttctctttgcttgtttgagctgttcttgccataatatggacttggaattttaccaaatagggctatcttctgtatacaacccctaccttgtcacaacacaactgattggcccaACGGGAaagggaaagaaattccacaaattaacttttaacaaggtacacctgttaattgaaatgcattccaggtgactacctcatgaagctgattgagagaatgccaagagtgtgcagagctgtcatcaatgcaaagggtggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927542 lncRNA upstream 114 31604209 ~ 31604473 (+) True G1685172
TU1927412 lncRNA upstream 83805 31520425 ~ 31520782 (+) True G1685047
TU1927304 lncRNA upstream 168094 31436253 ~ 31436493 (+) True G1684946
TU1927295 lncRNA upstream 173776 31430597 ~ 31430811 (+) True G1684937
TU1927235 lncRNA upstream 219312 31384983 ~ 31385275 (+) True G1684881
TU1927572 lncRNA downstream 22581 31627488 ~ 31627715 (+) True G1685201
TU1927573 lncRNA downstream 22976 31627883 ~ 31628106 (+) True G1685202
TU1927582 lncRNA downstream 31115 31636022 ~ 31636248 (+) True G1685211
TU1927613 lncRNA downstream 57758 31662665 ~ 31669942 (+) True G1685242
TU1927633 lncRNA downstream 85171 31690078 ~ 31690328 (+) True G1685262
XR_005037978.1 mRNA upstream 93410 31495094 ~ 31511177 (+) True LOC110499596
XM_036955550.1 mRNA upstream 163591 31440277 ~ 31440996 (+) True LOC118942000
XM_036956153.1 mRNA upstream 1363121 30219786 ~ 30241466 (+) True LOC110499324
XM_021576403.2 mRNA upstream 1386940 30194269 ~ 30217647 (+) True LOC110499323
XM_021576400.2 mRNA upstream 1544400 30025625 ~ 30060187 (+) True msh6
XM_036956183.1 mRNA downstream 108799 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA downstream 108799 31713706 ~ 31725878 (+) True erlec1
XM_036956188.1 mRNA downstream 217853 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA downstream 217877 31822784 ~ 31978074 (+) False wdr27
XM_036956189.1 mRNA downstream 429292 32034199 ~ 32073088 (+) False thbs2a
TU1924589 other upstream 2028029 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2028029 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2146666 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 2826178 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 2878092 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 1049447 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1572386 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2720930 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3776802 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3776802 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile