RNA id: TU1927645


Basic Information

Item Value
RNA id TU1927645
length 212
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1685274
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31702809 ~ 31703020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcttgattTTCATCAAGGGTGGCCCAAATAGACTGGATGACAAAGGCAGGTttctgtagaaacacacacacgcacacactactCCTCCCACTCATGTAATTATAAAGACCGTAGAGGTTTACATGGTGGGGTTGACAAGACTCAATGTCCTCACGTTGCATCATCTCCTCTGTGGGTGGTGTCTGAGTCAGTCTCAGCAGTAATGGTGTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927644 lncRNA upstream 1626 31700952 ~ 31701183 (+) True G1685273
TU1927643 lncRNA upstream 2701 31699885 ~ 31700108 (+) True G1685272
TU1927633 lncRNA upstream 12481 31690078 ~ 31690328 (+) True G1685262
TU1927613 lncRNA upstream 32867 31662665 ~ 31669942 (+) True G1685242
TU1927582 lncRNA upstream 66561 31636022 ~ 31636248 (+) True G1685211
TU1927646 lncRNA downstream 527 31703547 ~ 31703795 (+) True G1685275
TU1927647 lncRNA downstream 1015 31704035 ~ 31704366 (+) True G1685276
TU1927648 lncRNA downstream 1375 31704395 ~ 31704671 (+) True G1685277
TU1927650 lncRNA downstream 3738 31706758 ~ 31706971 (+) True G1685279
TU1927651 lncRNA downstream 4484 31707504 ~ 31707707 (+) True G1685280
XR_005037978.1 mRNA upstream 191632 31495094 ~ 31511177 (+) True LOC110499596
XM_036955550.1 mRNA upstream 261813 31440277 ~ 31440996 (+) True LOC118942000
XM_036956153.1 mRNA upstream 1461343 30219786 ~ 30241466 (+) True LOC110499324
XM_021576403.2 mRNA upstream 1485162 30194269 ~ 30217647 (+) True LOC110499323
XM_021576400.2 mRNA upstream 1642622 30025625 ~ 30060187 (+) True msh6
XM_036956183.1 mRNA downstream 10686 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA downstream 10686 31713706 ~ 31725878 (+) True erlec1
XM_036956188.1 mRNA downstream 119740 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA downstream 119764 31822784 ~ 31978074 (+) False wdr27
XM_036956189.1 mRNA downstream 331179 32034199 ~ 32073088 (+) False thbs2a
TU1924589 other upstream 2126251 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2126251 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2244888 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 2924400 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 2976314 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 951334 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1474273 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2622817 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3678689 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3678689 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile