RNA id: TU1927651


Basic Information

Item Value
RNA id TU1927651
length 204
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1685280
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31707504 ~ 31707707 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGAGGCCTACATTTTTTTGATAAAGCAATAGCCTAAGAGGATGGATGGCAAATCACTAAAATAGGCCTATGTCCCACATATAAATTATGCCTTTCCAACATCATTAAATACATACAATGTcaaagcagaccagaccagaaaaaGTAGTTGAACAACAGCACGATTGAGGAAGTTCAGCCATTGAGAACAGCCATTTAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927650 lncRNA upstream 533 31706758 ~ 31706971 (+) True G1685279
TU1927648 lncRNA upstream 2833 31704395 ~ 31704671 (+) True G1685277
TU1927647 lncRNA upstream 3138 31704035 ~ 31704366 (+) True G1685276
TU1927646 lncRNA upstream 3709 31703547 ~ 31703795 (+) True G1685275
TU1927645 lncRNA upstream 4484 31702809 ~ 31703020 (+) True G1685274
TU1927652 lncRNA downstream 1238 31708945 ~ 31709162 (+) True G1685281
TU1927653 lncRNA downstream 1623 31709330 ~ 31709561 (+) True G1685282
TU1927664 lncRNA downstream 27162 31734869 ~ 31736220 (+) False G1685291
TU1927667 lncRNA downstream 28606 31736313 ~ 31738506 (+) False G1685291
TU1927668 lncRNA downstream 28606 31736313 ~ 31738506 (+) True G1685291
XR_005037978.1 mRNA upstream 196327 31495094 ~ 31511177 (+) True LOC110499596
XM_036955550.1 mRNA upstream 266508 31440277 ~ 31440996 (+) True LOC118942000
XM_036956153.1 mRNA upstream 1466038 30219786 ~ 30241466 (+) True LOC110499324
XM_021576403.2 mRNA upstream 1489857 30194269 ~ 30217647 (+) True LOC110499323
XM_021576400.2 mRNA upstream 1647317 30025625 ~ 30060187 (+) True msh6
XM_036956183.1 mRNA downstream 5999 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA downstream 5999 31713706 ~ 31725878 (+) True erlec1
XM_036956188.1 mRNA downstream 115053 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA downstream 115077 31822784 ~ 31978074 (+) False wdr27
XM_036956189.1 mRNA downstream 326492 32034199 ~ 32073088 (+) False thbs2a
TU1924589 other upstream 2130946 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2130946 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2249583 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 2929095 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 2981009 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 946647 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1469586 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2618130 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3674002 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3674002 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile