RNA id: TU1927668


Basic Information

Item Value
RNA id TU1927668
length 1829
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G1685291
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31734869 ~ 31738506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gCGGTCCTTAATGGACAAGTCCCAGGTAGTTCCTCCCCGTTTTTCATTCTATTGTCTTCTGTTTGatgcctaatgaatacgacccagatGTTGTCCGTTGGTCTGGCCAGAGTGCAGGGTCCTGGATGTGAGGGCTTGGTCTACCCTCATGCAGGCTGGTGTGTTCTgttctgggcctgtattcacagtGTCTCAGAGTAGAGGTACTGATCGAGAATCAGGTCGCCCTGTCCATATAATGGTATTCAatatgatcctagatcagcaatccTACTCTAAACCGCTTCTTGAATATGGGCCTGTTCTGTTCAGTCTGAGACCTTCCTAGTCTAATGCCAGAGTGAGGAATTGTCAAAAGGCTCAGAGAGGCCATCGAGGATAACGTTCCTCCATTAAGAAAACATAAACATCTCCTGAAAGTTGCACCAGGACCCtaaagagagacagaatggataGCGGGATTAATGCTTGGCTCTAAAGAGACAGAATGCATAGCACAACTAATGCTTGGCCATAAATAGAGACAGAATGGATAGTGAGATTATTGCTTGGGCCTCGAGACAGAATGGATAGTGGGATTAATGGTTGGCACtaaagagagacagaatggataGGGGGATTAATGCTTGGCCCTAACGAGAGACAGAATGGATAGCGAGAGTAATGCTTGGCCCTAACGAGAGACAGAATGGATAGCGAGAGTAATGCTTGGCCCTAACGAGAGACAGAATGGATAGCGAGAGTAATGCTTGGCCCtaaagagagacagaatggataGTGGGATTAATGCTTGGCCCtaaagagagacagaatggataGTGGGATTAATGCTTGGCCCTAACGAGAGACAGAATGGATAGCGAGAGTAATGCTTGGCCCTAACGAGAGACAGAATGGATAGCGAGAGTAATGCTTGGCCCtaaagagagacagaatggataGTGGGATTAATGCTTGGCCCtaaagagagacagaatggataGTGGGATTAATGCTTGGCCCtaaagagagacagaatggataGTGGGATTAATGCTTGGCCCtaaagagagacagaatggataGTAGGATTAATGCTTGGCCCTAAAGAGAGGCAGAATGGATAGTGGGATTAATGCTTGGTACCTTGTGTTGTTTATAATGTAATTTGTTTTGGGATTTTTCCACCCAAGCATACgtttgaattgtgtgtgtgtgcatatgtaccATGGATCTAGGTTTAGTATCAGGGAGAGAACAGCAGGTGTGTGGGTGCTACTGTTAGCTGCTGTGTGTGTACCAGGTATCTAGGTTTAGTATCAGGGAGAGACCAGCAGGTTTGTGGGTGTTACTGTTAGCTGCTGTGTGTGTACCAGGTATCTAGGTTTAGTATCAGGGAGAGACCAGCAGGTGTGTGGGTGCTACTGTTAGCTGCTGTGTGTGTACCGGGTATCTAGGTTTAGTATCAGGGAGAGACCATCAGGTGTGTGGGTGTTACTGTTAGCTGCTGTGTGTGTACCAGGTATCTAGGCGTAATAGCAGGGAGAGACCAGCAGGTCGGTCAGAACCAGCAGCTGGTCGTCAGTGAACTGCTGTTTATGCTCCTGCCAGTTGTCATGATGAGTCCGTCTAAAGTTCGACAGGGTCTTCTTCACCGTCATCTGCAGGAGTAGACACAAGACGTATTCAGAAACAAGATGCCcgggaatggggagagagagacacttgtGTTTGGGGTACCCCTCATCTCTATAGGCTGTGTGtcgttgaggtgtgtgtgtttgtgtgagagagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927664 lncRNA upstream 93 31734869 ~ 31736220 (+) False G1685291
TU1927653 lncRNA upstream 26752 31709330 ~ 31709561 (+) True G1685282
TU1927652 lncRNA upstream 27151 31708945 ~ 31709162 (+) True G1685281
TU1927651 lncRNA upstream 28606 31707504 ~ 31707707 (+) True G1685280
TU1927650 lncRNA upstream 29342 31706758 ~ 31706971 (+) True G1685279
TU1927854 lncRNA downstream 175590 31914096 ~ 31916230 (+) True G1685473
TU1927857 lncRNA downstream 183760 31922266 ~ 31922621 (+) True G1685476
TU1927799 lncRNA downstream 185453 31923959 ~ 31977933 (+) True wdr27
TU1927916 lncRNA downstream 276089 32014595 ~ 32015103 (+) True G1685533
TU1927934 lncRNA downstream 309865 32048371 ~ 32054955 (+) True G1685550
XM_036956183.1 mRNA upstream 10435 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA upstream 10435 31713706 ~ 31725878 (+) True erlec1
XR_005037978.1 mRNA upstream 225136 31495094 ~ 31511177 (+) True LOC110499596
XM_036955550.1 mRNA upstream 295317 31440277 ~ 31440996 (+) True LOC118942000
XM_036956153.1 mRNA upstream 1494847 30219786 ~ 30241466 (+) True LOC110499324
XM_036956188.1 mRNA downstream 84254 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA downstream 84278 31822784 ~ 31978074 (+) False wdr27
XM_036956189.1 mRNA downstream 295693 32034199 ~ 32073088 (+) False thbs2a
XM_036956190.1 mRNA downstream 295694 32034200 ~ 32073088 (+) False thbs2a
XM_036956191.1 mRNA downstream 295786 32034292 ~ 32073088 (+) True thbs2a
TU1924589 other upstream 2159755 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2159755 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2278392 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 2957904 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3009818 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 915848 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1438787 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2587331 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3643203 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3643203 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile