RNA id: TU1927916


Basic Information

Item Value
RNA id TU1927916
length 471
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G1685533
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32014595 ~ 32015103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctccctacaatgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatccaccaactcctggacagtctgtggtgcaacgtggcgttggtggatggagcgagacatgatgtcccagatgtgctcaattggattcaggtctggggaacgggcgggcctgtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgccttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagccccccaaagaaatgccaccccacaccatgactgaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927799 lncRNA upstream 36662 31923959 ~ 31977933 (+) True wdr27
TU1927857 lncRNA upstream 91974 31922266 ~ 31922621 (+) True G1685476
TU1927854 lncRNA upstream 98365 31914096 ~ 31916230 (+) True G1685473
TU1927667 lncRNA upstream 276089 31736313 ~ 31738506 (+) False G1685291
TU1927668 lncRNA upstream 276089 31736313 ~ 31738506 (+) True G1685291
TU1927934 lncRNA downstream 33268 32048371 ~ 32054955 (+) True G1685550
TU1927935 lncRNA downstream 73814 32088917 ~ 32089177 (+) True G1685551
TU1927956 lncRNA downstream 78546 32093649 ~ 32093976 (+) True G1685572
TU1927968 lncRNA downstream 94419 32109522 ~ 32109737 (+) True G1685584
TU1927984 lncRNA downstream 126550 32141653 ~ 32144750 (+) True agpat4
XM_036956188.1 mRNA upstream 36521 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA upstream 36521 31822784 ~ 31978074 (+) False wdr27
XM_036956183.1 mRNA upstream 288717 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA upstream 288717 31713706 ~ 31725878 (+) True erlec1
XR_005037978.1 mRNA upstream 503418 31495094 ~ 31511177 (+) True LOC110499596
XM_036956189.1 mRNA downstream 19096 32034199 ~ 32073088 (+) False thbs2a
XM_036956190.1 mRNA downstream 19097 32034200 ~ 32073088 (+) False thbs2a
XM_036956191.1 mRNA downstream 19189 32034292 ~ 32073088 (+) True thbs2a
XM_021576412.2 mRNA downstream 108883 32123986 ~ 32143464 (+) False agpat4
XM_021576413.2 mRNA downstream 108883 32123986 ~ 32143464 (+) False agpat4
TU1924589 other upstream 2438037 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2438037 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2556674 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3236186 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3288100 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 639251 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1162190 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2310734 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3366606 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3366606 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile