RNA id: TU1927934


Basic Information

Item Value
RNA id TU1927934
length 3069
lncRNA type intronic
GC content 0.39
exon number 4
gene id G1685550
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32048371 ~ 32054955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACATGATACCATCAATGCAAGCTGTAAAATGACTCCCAACTTAGAACACAGCAACCTTAGTaatctagctagcttgctagttagctacagtagctagttaCAACAAGTAGATATGTTTCTAGCTAGCAGGAGCAGATTGCTGTATCACTAGCTAGCATGTCATTCCGCAATCAGTTTATTCCCTGTAATAATTGAAGACTACAAAAATCTATAGGACAAGTAGTGAAATCTAATACAGTCATCAAGACAGGACCCACTTATTTCATTCATACTGACAAATAAGAAATGTCACATTATCCTTGTCAATAGTTGGAGTAGGATGATTGCAGAGCACCCTTCCTCAGACTGTCACTGTCAGCTACATATGGTGACCAGGGTGTGATCCTTTCGATACGCCTAGAGGACCTGGGTTCACAAATACTCCTAGAGAGAAAGGGGAATACTGAATCATGTGTTGATGACAGTTCTACAGTGTCCATCAGAGGTCCAGGCTATCGGCATAGAGAGTAAAGGACTGCAACATTGTAAGATAGTGCCCTCCACGGCACTTGATATACATTGATTGGTAGGTTACACTATATTTAGACACTTCAAATACCGCCTGAGACACCTTTGCTATTTGTCTCCGTACTCAATAAAGGGTGAAACACTATTTGTTGATTGTGTTCTTTGTTCGTATGTATATGCATGAAACGTACATGATggaaaacatacagttgaagtcggaagtttacatacaccttagccaaatacatttaaactgagtttttcacaattcttgacatttaatccttgtaaaaatgtcctgttttaggtcagctaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagtagaatgatttatttaagcttttatttctttcatcacattcccagtgggtcagaagtttacagacactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaacgtttcaggtagccttccacaagcttcccataataagttgggtgaattttggcccactcctcctgacagagctggtgtaactgagtcaggtttgtaggcctccttgctcgcacacgctttttcagttctgcccacacattttcaataggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccattcgtgacttaacatcctgactgatttaacatttaactgatgtcttaagatgttgcttcaatatatccacatcattttccaccctcatgatgccctctattctgtgaagtgcaccagtccctccttcagcaaagcaccctcacaacatgatgctgccacccccatgcttcacggttgggattgtgttcttcggcttgcaagcccaaacataacgatggtcattatggcctaacagttctatttttgtttcatcagcccagaggacatttctccaaaaagtacgatctttgtccccacgtgcagttgaaaatcgtagtctggctttttttttgcTTGCtcctgagcagtggcttcttccttgctgagctgcctttcaggttatgtcgatataggacttgtttactgcggatatagataattttgtacatgtttcctccagaatcttcacaaggtcctttgctgttgttctgggattgatttgcacttttcgcagcaaagtacgttcatctctaggagacagaacgcgtctccttcctgagcggtatgacagctggtgtttatacttgcgtactattgtttgtacagatgaacgttgtaccttcaggcgtttggaaattgctcccaaggatgaaccagacttgtggaggtctacaatttattttctgaggtcttggctgattccttttgattttccaatgatgtcaagcaaagaggcgctgagcttgaaggtaggccttgaaatacatccacaggtacaccaccaattgactcaaatgatgtcaattagcctatcagcttctaaagtcatgacatcattttctggaattttccaagctgttgaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgatacagtgaattataagtgaaataatctgtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtagatgttttaACCAACTTACCAAAACAGTAGTTTGTTAacgagaaatttgtggagtggttgaaaaacaagttttaaagactccaacctaagtgcatgtaaacttccgtcttcaactgtatctcACACTCAGTCATAGTTActaaaataatgaaaataaataatgatTGCCAAGATTTTGGCACCGTCAACTTTTAGAAGGTTAGTAGGAAATTGTATCATTTAAACCACCTAAATATACTCACATTCACTGAACATGTAGTATCTGAACCTCAAACATTAATTTCCCAACTGCTGCTCTTTATCCTTCTCCATATCTTATACTCCAATGCATCCAGCATGTCCACCATGAAAACTCTGGTCATCTTATTGCAGAGCACATTGTGTTTTTAGAGAAGATTGTATTGCAAGGTGTCCTAAATGTGTAGGTTATGCCGTATGTATTGGCTAAAGTGGGTATGCAGCTGTCGTTTTTTAAACCTCCATTCTagcacatgacacacacacccaccctttTATTGGGGTTTCTATGTGAAGTGTATGATTGAATGTTTATCTTAGCCTGCATCTAGTTACATTGAAattagacatacagtgccttgcgaaagtattcagcccccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggatacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatctaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927916 lncRNA upstream 33268 32014595 ~ 32015103 (+) True G1685533
TU1927799 lncRNA upstream 70438 31923959 ~ 31977933 (+) True wdr27
TU1927857 lncRNA upstream 125750 31922266 ~ 31922621 (+) True G1685476
TU1927854 lncRNA upstream 132141 31914096 ~ 31916230 (+) True G1685473
TU1927667 lncRNA upstream 309865 31736313 ~ 31738506 (+) False G1685291
TU1927935 lncRNA downstream 33962 32088917 ~ 32089177 (+) True G1685551
TU1927956 lncRNA downstream 38694 32093649 ~ 32093976 (+) True G1685572
TU1927968 lncRNA downstream 54567 32109522 ~ 32109737 (+) True G1685584
TU1927984 lncRNA downstream 86698 32141653 ~ 32144750 (+) True agpat4
TU1928023 lncRNA downstream 121818 32176773 ~ 32177222 (+) True G1685630
XM_036956188.1 mRNA upstream 70297 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA upstream 70297 31822784 ~ 31978074 (+) False wdr27
XM_036956183.1 mRNA upstream 322493 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA upstream 322493 31713706 ~ 31725878 (+) True erlec1
XR_005037978.1 mRNA upstream 537194 31495094 ~ 31511177 (+) True LOC110499596
XM_021576412.2 mRNA downstream 69031 32123986 ~ 32143464 (+) False agpat4
XM_021576413.2 mRNA downstream 69031 32123986 ~ 32143464 (+) False agpat4
XM_021576414.2 mRNA downstream 69054 32124009 ~ 32143464 (+) False agpat4
XM_021576416.2 mRNA downstream 190948 32245903 ~ 32262177 (+) True kcnk1b
XM_036956195.1 mRNA downstream 236310 32291265 ~ 32476165 (+) True LOC110499334
TU1924589 other upstream 2471813 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2471813 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2590450 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3269962 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3321876 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 599399 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1122338 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2270882 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3326754 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3326754 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile