RNA id: TU1928564


Basic Information

Item Value
RNA id TU1928564
length 3527
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G1686103
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32258624 ~ 32272244 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTAAATCTGCATTTATTTCTATGAGAAACTAGACAGAGCACAATAATATACAGTTGTTGTTATTGCACAGATACACAGGCGACTGAAATAGCGCATGCACCACACAATAACACTGACAAGGATTGACAAGGACGTCGACAGTTTTGTGTGCTATAAGACCAATGTGGCAtatatataaatcatttaaaGAATAGACCAATGCATTTCAGACAAAATATTTATAACAGTAAAAATATCACTGCAACTGTCAAGTCCCCTTAGCCAGGGGGAGATTGTCATTCTCCCTTTTGGCCAACTAACAAAAGTACCAACACGATTACATGCAATTCCTCTGTTTGCTAAACTGGTATTCAAAACAAAACATTCTTGACAATGTTAAAGGCTTCTACTCATTCTGTCATTGTGCGATGTAGAAGAGTTTTGTGGAAAGAACTACAGTCAAAACAAAAACCCTGAAACGTTCTTAGATGATCTAGAAAACATAATTCTGCACAACACAACCATATGTTGAAAATGAAACGTCTACATTCTCAAGAATGGACAGCAGTTTCTTGTCTGGTACAATACAATCAGGTAGGATTTGGTGCTATAAAATAAGTCTGTCCCATCTGAAAAAGGTACTCATATAGTATGATTGAGTAGTGTATGATATAGGCTAGTCTGTcctacatatgtaggatcttaatttgatctatattgtcacagcaaaataatcctgcagcaacaggatttgaacgtttagtccataatgttgcttgatcggtggttaggctattagctggctaaaagtaggctacataaaaagtgcaatactgttaatataaccacgtgttagtgtgggttttcagcgaatttatgtaaatcacaaagctcatcttCAAATTCTCTGAAACAAAAGggtaatcaaattaagatcctaaatATGTATAAATAATATTACCAGTATGTACACAAGCAAATCAGCTTGTACTGTAGGCTACAAGCAAATTACTTCCAAATACAGAATGACATCAAGTCAGAAAAAATATGTACAAGCAAATAAATTAATGTTCCTTGATGTACATCTTAACTTAAATGTTAATATAGTACATTTTTTGTAGATCTTTGGACAATATATGTCAGATAACTCATTATGCAGCTATTGAAAATCAGTTTGAGTTTTGACTGCATTGCACTGTAAAGCAGTCCTGTCTGTCaatcagtgtttcctatcttcaagTTTCTCTCACAATGACTCTCATGGAGTACCTTCACTTGAAATCATCATCTGCATAAATCATAAATACACATTTGTAAACACTCCACTTTACATCCTCCAAAAATACTAGACTCTTTTTAAATTTGGTTCAAAAACAGTTCAAATTTCCAGTATCAAATAATGTCTTGTGTCACAAAGCAGTCCTGAAGTTTTATACAAACTGCCAGCCTACTAACATTACTTATGAATTCAGTTGTTAACCCTCTTTGTCCTCtcacttaaagatgcactatgcagaaatcgatCCCCCATTTCTTTGTTGGCAAAATTCAGACAGtacacctaatttcagtttatatggtgacaaaacaagcaagtatagtgaagagaatcattgtaccatctaaaccactgtgaaattaTGTATCATTTCCATAaccaaaatgtttattttcagcTATAAGCAGCTGGTATACAAATCCAAAAGTAAAACTAAActtaacaggaagcatagaaatagcacacatagaacaattcttcttagacttgctttcaattaaAGATCTATAACTTATttatatgtgaatttggtcaggtcgcccaaaacgttccatattgcagctttaaatctGAGGTACGGGAAATTACTTTTGTACTTTCCAGAACCAATTATTTTCATACAAAATATTCAACCCAGTAATTTCCCATTTCCGAGTGGTGTCACATAAGATGAACAGTAACCTGCTGTGTTCAAATATTTTATGAAAATACACTGCAAAAAAATAATGAAGGGTGCTTTGTGGTTCTATACATAATCTTTTTTAGGGACATGATATGAGCAACTGAACCTTTTTTGTTTTAAATAGCAGCATTTCTTCTAGCAGCGTACCCTACTTGGGGTCTGCCTCATTCTTGTTCCCCctttaaagtttaaaaaaagcTTTCATAATTGTCACGAACGTTCAATAAACCATATTACACAGTAAATCCCTTTCTTTTAGACGAATCAACATGAAAAATACACAGTACAGCGCGAGACATGACACATTTAACTACCTTAAAATAACATTGCAAGTTGTACTTTAAACTAGCATCAAACAAGTCTTACTGTAATTAATACACAGAGCATTTACAACAATGAAATGTGCTACTGTTGTATACCTGATACAGTTAACCTGAATACATGCGTTCCATTAAACTCCTGTAAAATAGTACTTAAGGTATACAGACATTACGGCACAATGTGATATTCAGTTACATTTTACAAGGTGGATGTCCCATTTAAGGTTCCCTAATGTGCTATTGTCAAGTCAGTTCTATGAAGCCCATATCTGTGCTTATGTATTACGACTGCCTTATAACTTGCGATGAGCGAGTTCATAATGCATTATAGATACAGTATGTGCTTAATGTTATTCCATCCATGAGAACAGCTGATAGCATGGCTGTTCTGAGCGAGGACTTTGACAATGAACAAAGCTAAAGCAGGCGTTTCCCTTATCATTAAGTTAACCAGCGTACATCAGTTATACATATGAAGGCTATATTAAGTTTTTCCTATGTCAGTGAATACAGATCTTGTTAATGCAGTATAGCACAATAGGCTCATTTTTCATCATTAAGAGAGTGATAGTTAAGTTTCTCATGGATGGTAAAGGGCTAAAAGACAATCGTTCAATTTCAACATTACTAACAATGGTTTGAAGTTGAGCTTTTGTTTTTAAAATGCATCCTTATGCTGAAGCTTAAGTTATAATGTAGTCACAAATATCCTTCTACGAGAGTCCTCTGTATCACCCTCCCATAGGTTGCATCCCAATTCTCTAGCCTTTTCATTAAAAAACATTGAATAGGTGTAAGCATTCACTGGGGAGAGAGTTTCAGCTAACGGTAAAGTTTCTCCTAGAAAATTCATGATAGGCAGTGTACACTTCAAAAGAAGGATAGCAAAATGGGATGCAAACTTGGTTTCACCATCCCCCCTTCAGTACTCTCCTTTTCCTTCTCTAGTTTCCTGCCTATTTCACCGCAACATTTTTAACTATTTCCCCCCCCTCTAGTTGATCATGGGGTCATCTCCACCAGGCGAGGCCAGCACAGGGACACTAACGGAGGGTACGTCCTTAGTCTTGTCCCCCTTGAGCGAGGTGGAGTTGGTCTGGTGGGACACGGAGGTGAAGGACAGATGGTCGTGCTCCAGTATTGCCAGGCGGTCCTGTGGTTTCTCCTTCTTCAGATAGAACATCTTCCTCAGGGTCTTCAGCTGCTGCAGCTCACAGAAGGTCTCCAAGACAACCAGCATCACAACCAGGCCCAGGAGGAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928469 lncRNA downstream 166333 32092003 ~ 32092291 (-) True G1686017
TU1928467 lncRNA downstream 167244 32091131 ~ 32091380 (-) True G1686015
TU1928465 lncRNA downstream 169449 32088823 ~ 32089175 (-) True G1686013
TU1928320 lncRNA downstream 374725 31882736 ~ 31883899 (-) True G1685883
TU1927759 lncRNA downstream 522421 31734856 ~ 31736203 (-) True LOC110499326
TU1928594 lncRNA upstream 47964 32310134 ~ 32314207 (-) True G1686128
TU1928638 lncRNA upstream 135949 32398119 ~ 32398482 (-) True G1686157
TU1928651 lncRNA upstream 164904 32427074 ~ 32466581 (-) True G1686170
TU1928670 lncRNA upstream 191724 32453894 ~ 32456754 (-) True G1686188
TU1928671 lncRNA upstream 192215 32454385 ~ 32457132 (-) True G1686189
XM_021576410.2 mRNA downstream 32402 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA downstream 32402 32143509 ~ 32226222 (-) True LOC110499330
XM_036956193.1 mRNA downstream 32798 32143509 ~ 32225826 (-) False LOC110499330
XM_036956194.1 mRNA downstream 99828 32154937 ~ 32158796 (-) False LOC110499332
XR_005037979.1 mRNA downstream 99828 32154937 ~ 32158796 (-) True LOC110499332
LOC118942460 mRNA upstream 239959 32502129 ~ 32502308 (-) True LOC118942460
LOC118942014 mRNA upstream 392787 32654957 ~ 32656185 (-) True LOC118942014
XM_021576418.2 mRNA upstream 398051 32660221 ~ 32661706 (-) True LOC110499335
XM_021576419.2 mRNA upstream 414200 32676370 ~ 32688426 (-) True LOC110499337
XR_002469938.2 mRNA upstream 440548 32702718 ~ 32704450 (-) False LOC110499340
TU1927277 other downstream 845780 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1144938 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 2712307 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 549537 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 815640 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 1271503 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 1281516 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2996819 35258989 ~ 35259818 (-) True G1689130

Expression Profile