RNA id: TU1928227


Basic Information

Item Value
RNA id TU1928227
length 210
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1685794
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32482861 ~ 32483070 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcacgggagtggtagcatcatgttttgagggtgctttgctgcgcagaactgaaaaagcgcgtgcgagcaaggaggcctacaaacctgactcagttagaccagctctgtcaggaggaatgggacaaatttcacccaacttattgtgggaagcttgtggagggctacccgaaacgtttgacccaagtaaaacaatttaaaggcaatgctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928224 lncRNA upstream 2257 32480270 ~ 32480604 (+) True G1685791
TU1928076 lncRNA upstream 241655 32238364 ~ 32241206 (+) True G1685680
TU1928023 lncRNA upstream 305639 32176773 ~ 32177222 (+) True G1685630
TU1927984 lncRNA upstream 338111 32141653 ~ 32144750 (+) True agpat4
TU1927968 lncRNA upstream 373124 32109522 ~ 32109737 (+) True G1685584
TU1928231 lncRNA downstream 3845 32486915 ~ 32487149 (+) True G1685798
TU1928232 lncRNA downstream 4326 32487396 ~ 32487632 (+) True G1685799
TU1928238 lncRNA downstream 15737 32498807 ~ 32499015 (+) True G1685805
TU1928240 lncRNA downstream 18589 32501659 ~ 32501871 (+) True G1685807
TU1928263 lncRNA downstream 57112 32540182 ~ 32540614 (+) True G1685830
XM_036956195.1 mRNA upstream 6696 32291265 ~ 32476165 (+) True LOC110499334
XM_021576416.2 mRNA upstream 220684 32245903 ~ 32262177 (+) True kcnk1b
XM_021576412.2 mRNA upstream 339397 32123986 ~ 32143464 (+) False agpat4
LOC110499531 mRNA downstream 129888 32612958 ~ 32613933 (+) True LOC110499531
XM_021576423.2 mRNA downstream 207017 32690087 ~ 32702525 (+) True LOC110499339
XM_036956202.1 mRNA downstream 219721 32702791 ~ 32736730 (+) False LOC110499338
XM_036956198.1 mRNA downstream 219732 32702802 ~ 32736730 (+) False LOC110499338
XM_036956199.1 mRNA downstream 220668 32703738 ~ 32736730 (+) False LOC110499338
TU1924589 other upstream 2906303 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2906303 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3024940 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3704452 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3756366 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 171284 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 694223 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1842767 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2898639 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2898639 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile