RNA id: TU1928779


Basic Information

Item Value
RNA id TU1928779
length 251
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1686292
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32621277 ~ 32621527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaataacatgtttttttaaCAGCAAAAAATCATTGGAGGACTCAAAGTATTATTTGGATCAGttcccaaagaacccttgagAAAACctcatttttttgtgtgtatgagaTTTGTATGTAAAACACTGACATTggacatttagcagatgctcttatccagagtgacttacagtaagtgcattcatcttaagatagctaggtgagacgcccacatatcacagtcaaatatacaggatacgaacattccattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928758 lncRNA upstream 29755 32590909 ~ 32591522 (+) True G1686274
TU1928756 lncRNA upstream 33745 32587107 ~ 32587532 (+) True G1686272
TU1928752 lncRNA upstream 39396 32581536 ~ 32581881 (+) True G1686268
TU1928739 lncRNA upstream 63848 32557209 ~ 32557429 (+) True G1686256
TU1928263 lncRNA upstream 80663 32540182 ~ 32540614 (+) True G1685830
TU1928781 lncRNA downstream 2735 32624262 ~ 32624464 (+) True G1686294
TU1928783 lncRNA downstream 5005 32626532 ~ 32626835 (+) True G1686296
TU1928789 lncRNA downstream 19961 32641488 ~ 32641702 (+) True G1686302
TU1928790 lncRNA downstream 20522 32642049 ~ 32642286 (+) True G1686303
TU1928825 lncRNA downstream 54868 32676395 ~ 32678456 (+) True G1686333
LOC110499531 mRNA upstream 7344 32612958 ~ 32613933 (+) True LOC110499531
XM_036956195.1 mRNA upstream 145112 32291265 ~ 32476165 (+) True LOC110499334
XM_021576416.2 mRNA upstream 359100 32245903 ~ 32262177 (+) True kcnk1b
XM_021576412.2 mRNA upstream 477813 32123986 ~ 32143464 (+) False agpat4
XM_021576423.2 mRNA downstream 68560 32690087 ~ 32702525 (+) True LOC110499339
XM_036956202.1 mRNA downstream 81264 32702791 ~ 32736730 (+) False LOC110499338
XM_036956198.1 mRNA downstream 81275 32702802 ~ 32736730 (+) False LOC110499338
XM_036956199.1 mRNA downstream 82211 32703738 ~ 32736730 (+) False LOC110499338
XM_036956201.1 mRNA downstream 82211 32703738 ~ 32736730 (+) False LOC110499338
TU1924589 other upstream 3044719 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3044719 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3163356 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3842868 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3894782 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 32827 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 555766 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1704310 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2760182 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2760182 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile