RNA id: TU1928923


Basic Information

Item Value
RNA id TU1928923
length 1662
lncRNA type read_through
GC content 0.40
exon number 3
gene id G1686425
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32647250 ~ 32702534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttttccaCACATTTATTGGTTCAGCACAGGCTTCAGAAACAGTGCATTACAATGAAGTTTAACACTAATAAATAACCTTTTATTACAAAGGATTTTCCTTTCAGTCAGAAGATTGTTGCCAATGTCAAAGGAGAATGTCTTGGGAACGACTGGGGAAGGATAGAACAGGCATATCCTATAGGAATGGGTACTTGCATTGCAGTTTTCCCACTTAGAGGTGTTACAAACAGAAAAGGCAAACGTCAAGTAAAATTAACACAAATCTTTTCAGAGTAGAAGAGTGGTTCTAGCAGCAGACAGGGTGGTTAAGATGCACTTAGAGTATGGGCCTACTCATAGATTGTGGAATGCTCACAAAGTTGAAGATATAAATGAAACGTATATAAACGAATCAGCTCGCTTGGACGTGGAAGAAGCGAGTTGGTCTGTTACGTGCAATCTATTTCTATCTGCATCTATGAATGTTTAGCCCTGAATGCCACTGGTGTAGGCTAAAGCAGAAACAGACCGACAGTGCAGGTACCAAACGTTTGATCCCACTGACAAAACAGTATCAATGGGACACACTACTCAAGAGGAAATGGGATGGAAAAACATGTTACAAACAGCAGTACTTGCACATAGAAGCACCATCCAAGGCTAGGAAAGGTATTCAGTCAACTTCTGATGTGGTTTTACATGACACACAGAAGCAACATCAAGGGAAGGGGGCATGGGAGAAAGAGCTATTTGGTCTCTGCCACAGCTCTTAAAAACCTCTACAGGACCAGTGTCCCTATaccgggacagttgagctaacgtacactgatgtgattagcatgacagtTGTAAGTAAAAGCAAACTTTCCAGGaaatagacatgtcttatatgggtaGACAACtttaattattgttaatctaactacactgtccaatttacagtagctattacagtgaaataataccatgctattgtttgaggagagtgcacagttatgtacttaaatgtatcaataaaccaattaggcacatttgggaagACATTTTGAACAGTAATACAATGGtgcattggatcagtctaaaactttgcacatacactgctgccatctagtggccaaaatctaagtTGTACCTAGACTCCTAAGTCATATAATGAATGgcctctcttgcatttcaaagatggaacaaaaaaaattgaaaaagcatgtttttttttcctacattaatttccacaaacgtcaaagtgtttcttttcaaatggtatcaagaatatgcgtATCCTTGCTTcatgtcctgagctacaggcagttagatttgggtatgtcattttaggcgaaaatatGGGGGAAAAAAGGGGCGAATCCTTAAGAGGAGATGGACACTGTCGTCCAACTTCTGATGTGGTTATACAGTGAATTGCGCAACCACAGACAGGGCAAAGGAAAACAAAAAGTGAAGAACCAGTACAACCGTGTGTGTTGTGCAAATATGAATTATTTCTCCCTTCTTGTGGTTTTAACTGTTTATTAATTTggctatttttttTGTTGTTGTTTGTGGTTGGGTAGTAACAGGTTCCGTTGTTTGGGGTTGGGTAGCAACAGGTTCCGTTGTTTGGGGTTGGGTAGCAACAGGTTCCGTTGTTTGGGGTTGGGTAGCAACAGGTTCCGTTGTTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928911 lncRNA downstream 18256 32628785 ~ 32628994 (-) True G1686414
TU1928910 lncRNA downstream 18734 32628300 ~ 32628516 (-) True G1686413
TU1928909 lncRNA downstream 19488 32627535 ~ 32627762 (-) True G1686412
TU1928902 lncRNA downstream 39154 32607666 ~ 32608096 (-) True G1686405
TU1928768 lncRNA downstream 43414 32603570 ~ 32603836 (-) True G1686284
TU1928955 lncRNA upstream 4535 32707069 ~ 32707817 (-) True G1686454
TU1928956 lncRNA upstream 5389 32707923 ~ 32708137 (-) True G1686455
TU1928957 lncRNA upstream 5683 32708217 ~ 32708540 (-) True G1686456
TU1928958 lncRNA upstream 7101 32709635 ~ 32709927 (-) True G1686457
TU1928962 lncRNA upstream 11201 32713735 ~ 32714214 (-) True G1686461
LOC118942460 mRNA downstream 144942 32502129 ~ 32502308 (-) True LOC118942460
XM_021576410.2 mRNA downstream 421028 32143509 ~ 32226222 (-) False LOC110499330
XR_002469938.2 mRNA upstream 184 32702718 ~ 32704450 (-) False LOC110499340
XR_005037980.1 mRNA upstream 915 32703449 ~ 32704453 (-) True LOC110499340
XM_021576425.2 mRNA upstream 108461 32810995 ~ 32812999 (-) False LOC110499342
XM_021576426.2 mRNA upstream 113853 32816387 ~ 32821014 (-) True LOC110499343
XM_036956204.1 mRNA upstream 167981 32870515 ~ 32896733 (-) False LOC110499345
TU1927277 other downstream 1234406 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1533564 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 3100933 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 109173 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 375276 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 831139 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 841152 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2556455 35258989 ~ 35259818 (-) True G1689130

Expression Profile