RNA id: TU1928954


Basic Information

Item Value
RNA id TU1928954
length 466
lncRNA type intronic
GC content 0.45
exon number 2
gene id G1686453
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32693796 ~ 32694289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgggggatagtatatTGATACAGGCTAGTGTTTtggctgttcgttaggcctactccgCTTGTTGGCTGATAAAAGTAGGATACATGTGGACAGttctaacatcttcaatatgcacctcagaATTCCATAAGAGTGACGCGAGCATTTGCGTCCCTGATGTGTCGGTCTTCattcacttgtagcctacttctTAGCTGAAatgcctgtgagaaggacccAATCACGGGACGGGCATTGGCTACATCTGAGAgaaccatgtgagtgagaggtgctttgaAGCTTTGGCCGCAGAAGGCATGGATTTTTATAGGGGACATTACAGTCACACAGGGGGAATGCCGCCGGTAAATTCAAGGCCTGGTGAGAATATCAAGttcttgtcaaattgtgaatgagagactttcaaatcctcaTTAGAGtcccatcatgcagccttagaatgtattaaacatCAAAACATACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928911 lncRNA downstream 64802 32628785 ~ 32628994 (-) True G1686414
TU1928910 lncRNA downstream 65280 32628300 ~ 32628516 (-) True G1686413
TU1928909 lncRNA downstream 66034 32627535 ~ 32627762 (-) True G1686412
TU1928902 lncRNA downstream 85700 32607666 ~ 32608096 (-) True G1686405
TU1928768 lncRNA downstream 89960 32603570 ~ 32603836 (-) True G1686284
TU1928922 lncRNA upstream 5859 32700148 ~ 32702534 (-) True G1686425
TU1928955 lncRNA upstream 12780 32707069 ~ 32707817 (-) True G1686454
TU1928956 lncRNA upstream 13634 32707923 ~ 32708137 (-) True G1686455
TU1928957 lncRNA upstream 13928 32708217 ~ 32708540 (-) True G1686456
TU1928958 lncRNA upstream 15346 32709635 ~ 32709927 (-) True G1686457
XM_021576419.2 mRNA downstream 5370 32676370 ~ 32688426 (-) True LOC110499337
XM_021576418.2 mRNA downstream 32090 32660221 ~ 32661706 (-) True LOC110499335
LOC118942014 mRNA downstream 37611 32654957 ~ 32656185 (-) True LOC118942014
LOC118942460 mRNA downstream 191488 32502129 ~ 32502308 (-) True LOC118942460
XM_021576410.2 mRNA downstream 467574 32143509 ~ 32226222 (-) False LOC110499330
XR_002469938.2 mRNA upstream 8429 32702718 ~ 32704450 (-) False LOC110499340
XR_005037980.1 mRNA upstream 9160 32703449 ~ 32704453 (-) True LOC110499340
XM_021576425.2 mRNA upstream 116706 32810995 ~ 32812999 (-) False LOC110499342
XM_021576426.2 mRNA upstream 122098 32816387 ~ 32821014 (-) True LOC110499343
XM_036956204.1 mRNA upstream 176226 32870515 ~ 32896733 (-) False LOC110499345
TU1927277 other downstream 1280952 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1580110 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 3147479 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 117418 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 383521 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 839384 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 849397 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2564700 35258989 ~ 35259818 (-) True G1689130

Expression Profile