RNA id: TU1928955


Basic Information

Item Value
RNA id TU1928955
length 749
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1686454
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32707069 ~ 32707817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttatttcagtactttgttgatgcacctctggcagtgattacaatctcgagtcttcttgggtatgacgctaaaagcttggcacacctgtatttggggagtttctcctattcttctctgcagaccctctcaagctctgtcaggttgaatggggagcgtcacagcacagctattttcaggtctctccagagatgtttgatggggttcaagtctgggctctggctgggccactcaaggctcaaggacatttagagacttgtcccaaagggactaatgcgttgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaaccttcgccccagtcggaaTCCTCTCTCGAAGAGATTACGAGCTAAAtagcttctatgctcgcttcgaggcaagcaacactgaagcatgcatgagagcatcagctgttccggacgactgtgtgatcaggctctctgcagccgatgtgagcaagaccttgaaacaggtcaacattctcaAGGCCACAGTGCCAGACGGATTAtaaggacgtgtactcagagcatgcgctgaccaactggcaagtgtcttcactgaaattTTCAACCTGTCTCTTacggagtctgtaataccaacatgttttaagcagaccaccatagtccctgtgctcaagaagaccaaggtaacctgcctaaattactaccgacacgtagcactcacatcggtagccatgaagtgctttgaaaggctggtcatggctcacttcaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928923 lncRNA downstream 4535 32647250 ~ 32702534 (-) False G1686425
TU1928922 lncRNA downstream 4535 32700148 ~ 32702534 (-) True G1686425
TU1928954 lncRNA downstream 12780 32693796 ~ 32694289 (-) True G1686453
TU1928911 lncRNA downstream 78075 32628785 ~ 32628994 (-) True G1686414
TU1928910 lncRNA downstream 78553 32628300 ~ 32628516 (-) True G1686413
TU1928956 lncRNA upstream 106 32707923 ~ 32708137 (-) True G1686455
TU1928957 lncRNA upstream 400 32708217 ~ 32708540 (-) True G1686456
TU1928958 lncRNA upstream 1818 32709635 ~ 32709927 (-) True G1686457
TU1928962 lncRNA upstream 5918 32713735 ~ 32714214 (-) True G1686461
TU1928963 lncRNA upstream 6814 32714631 ~ 32714832 (-) True G1686462
XR_005037980.1 mRNA downstream 2616 32703449 ~ 32704453 (-) True LOC110499340
XR_002469938.2 mRNA downstream 2619 32702718 ~ 32704450 (-) False LOC110499340
XM_021576419.2 mRNA downstream 18643 32676370 ~ 32688426 (-) True LOC110499337
XM_021576418.2 mRNA downstream 45363 32660221 ~ 32661706 (-) True LOC110499335
LOC118942014 mRNA downstream 50884 32654957 ~ 32656185 (-) True LOC118942014
XM_021576425.2 mRNA upstream 103178 32810995 ~ 32812999 (-) False LOC110499342
XM_021576426.2 mRNA upstream 108570 32816387 ~ 32821014 (-) True LOC110499343
XM_036956204.1 mRNA upstream 162698 32870515 ~ 32896733 (-) False LOC110499345
XM_036956205.1 mRNA upstream 162698 32870515 ~ 32902674 (-) True LOC110499345
XR_005037981.1 mRNA upstream 221188 32929005 ~ 32940772 (-) True LOC118942059
TU1927277 other downstream 1294225 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1593383 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 3160752 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 103890 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 369993 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 825856 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 835869 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2551172 35258989 ~ 35259818 (-) True G1689130

Expression Profile