RNA id: TU1928957



Basic Information


Item Value
RNA id TU1928957
length 324
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1686456
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32708217 ~ 32708540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagcccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagagtacataacaaagtattgagataaacttttgttattgaccaaatacttattttccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1928956 lncRNA downstream 80 32707923 ~ 32708137 (-) True G1686455
TU1928955 lncRNA downstream 400 32707069 ~ 32707817 (-) True G1686454
TU1928923 lncRNA downstream 5683 32647250 ~ 32702534 (-) False G1686425
TU1928922 lncRNA downstream 5683 32700148 ~ 32702534 (-) True G1686425
TU1928954 lncRNA downstream 13928 32693796 ~ 32694289 (-) True G1686453
TU1928958 lncRNA upstream 1095 32709635 ~ 32709927 (-) True G1686457
TU1928962 lncRNA upstream 5195 32713735 ~ 32714214 (-) True G1686461
TU1928963 lncRNA upstream 6091 32714631 ~ 32714832 (-) True G1686462
TU1928964 lncRNA upstream 6525 32715065 ~ 32715782 (-) True G1686463
TU1928993 lncRNA upstream 36323 32744863 ~ 32745190 (-) True G1686482
XR_005037980.1 mRNA downstream 3764 32703449 ~ 32704453 (-) True LOC110499340
XR_002469938.2 mRNA downstream 3767 32702718 ~ 32704450 (-) False LOC110499340
XM_021576419.2 mRNA downstream 19791 32676370 ~ 32688426 (-) True LOC110499337
XM_021576418.2 mRNA downstream 46511 32660221 ~ 32661706 (-) True LOC110499335
LOC118942014 mRNA downstream 52032 32654957 ~ 32656185 (-) True LOC118942014
XM_021576425.2 mRNA upstream 102455 32810995 ~ 32812999 (-) False LOC110499342
XM_021576426.2 mRNA upstream 107847 32816387 ~ 32821014 (-) True LOC110499343
XM_036956204.1 mRNA upstream 161975 32870515 ~ 32896733 (-) False LOC110499345
XM_036956205.1 mRNA upstream 161975 32870515 ~ 32902674 (-) True LOC110499345
XR_005037981.1 mRNA upstream 220465 32929005 ~ 32940772 (-) True LOC118942059
TU1927277 other downstream 1295373 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1594531 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 3161900 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 103167 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 369270 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 825133 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 835146 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2550449 35258989 ~ 35259818 (-) True G1689130

Expression Profile