RNA id: TU1928958



Basic Information


Item Value
RNA id TU1928958
length 293
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1686457
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32709635 ~ 32709927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGGTCTATACAGGGTGATGGCCAGcactggtggctgacatttaaacagtataacatgCTGCTCAAAAGACCCAAAGTCGCCAAATGAAATCTCCTCACAGCTGGAAGCAATAGCAAAAAGAGGCTGTCCCTCCCACACTTTTCTGATAGAGTATGAAAAGCTTCAGCCCGGGGGGGGCTTCAATAAGAGCATCTCTACAGTCTGAAGACAGCCATGTTTAGTGAGAAACATGCCATCAAcatgaacacttatgtaaatgtgaaatttccatttaaaaaaataatatacagcgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1928957 lncRNA downstream 1095 32708217 ~ 32708540 (-) True G1686456
TU1928956 lncRNA downstream 1498 32707923 ~ 32708137 (-) True G1686455
TU1928955 lncRNA downstream 1818 32707069 ~ 32707817 (-) True G1686454
TU1928923 lncRNA downstream 7101 32647250 ~ 32702534 (-) False G1686425
TU1928962 lncRNA upstream 3808 32713735 ~ 32714214 (-) True G1686461
TU1928963 lncRNA upstream 4704 32714631 ~ 32714832 (-) True G1686462
TU1928964 lncRNA upstream 5138 32715065 ~ 32715782 (-) True G1686463
TU1928993 lncRNA upstream 34936 32744863 ~ 32745190 (-) True G1686482
TU1928994 lncRNA upstream 36327 32746254 ~ 32746480 (-) True G1686483
XR_005037980.1 mRNA downstream 5182 32703449 ~ 32704453 (-) True LOC110499340
XR_002469938.2 mRNA downstream 5185 32702718 ~ 32704450 (-) False LOC110499340
XM_021576419.2 mRNA downstream 21209 32676370 ~ 32688426 (-) True LOC110499337
XM_021576418.2 mRNA downstream 47929 32660221 ~ 32661706 (-) True LOC110499335
LOC118942014 mRNA downstream 53450 32654957 ~ 32656185 (-) True LOC118942014
XM_021576425.2 mRNA upstream 101068 32810995 ~ 32812999 (-) False LOC110499342
XM_021576426.2 mRNA upstream 106460 32816387 ~ 32821014 (-) True LOC110499343
XM_036956204.1 mRNA upstream 160588 32870515 ~ 32896733 (-) False LOC110499345
XM_036956205.1 mRNA upstream 160588 32870515 ~ 32902674 (-) True LOC110499345
XR_005037981.1 mRNA upstream 219078 32929005 ~ 32940772 (-) True LOC118942059
TU1927277 other downstream 1296791 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1595949 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 3163318 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 101780 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 367883 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 823746 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 833759 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2549062 35258989 ~ 35259818 (-) True G1689130

Expression Profile