RNA id: TU1928845


Basic Information

Item Value
RNA id TU1928845
length 352
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1686352
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32744868 ~ 32745219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttcataatggtaaataaGTATTTTGCAAGGTTATCCCAAAACTCTGCCACAAATTTACATTCAAAGAACAAGTGAGACAGATTCTCACCTTCTTTTTCACAGAAAACGCAGATATCATCAATAGCCACAAATTTGGAcatcatagaattacatggatatatcttaTGCAAAATGTTGAAGTGCACTTCCTTAACTTTGTTTGGTATACAGTATTTGTAAGGCCTTAACCATGCATTTGTCAGGAATAAGCATGTTCCAGAAAAACTTTCCTCTCGGTGTAAGTTGGTTTTGTGAATGAATAATttcttatatacagtgccttgcgaaagtattcggcccccttgaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928797 lncRNA upstream 37727 32706827 ~ 32707141 (+) True G1686310
TU1928825 lncRNA upstream 66412 32676395 ~ 32678456 (+) True G1686333
TU1928790 lncRNA upstream 102582 32642049 ~ 32642286 (+) True G1686303
TU1928789 lncRNA upstream 103166 32641488 ~ 32641702 (+) True G1686302
TU1928783 lncRNA upstream 118033 32626532 ~ 32626835 (+) True G1686296
TU1928856 lncRNA downstream 27009 32772228 ~ 32772613 (+) True G1686362
TU1928858 lncRNA downstream 30161 32775380 ~ 32775589 (+) True G1686364
TU1928860 lncRNA downstream 31201 32776420 ~ 32776670 (+) True G1686366
TU1928861 lncRNA downstream 31856 32777075 ~ 32777281 (+) True G1686367
TU1928865 lncRNA downstream 42318 32787537 ~ 32787772 (+) True G1686371
XM_036956202.1 mRNA upstream 8138 32702791 ~ 32736730 (+) False LOC110499338
XM_036956198.1 mRNA upstream 8138 32702802 ~ 32736730 (+) False LOC110499338
XM_036956199.1 mRNA upstream 8138 32703738 ~ 32736730 (+) False LOC110499338
XM_036956201.1 mRNA upstream 8138 32703738 ~ 32736730 (+) False LOC110499338
XM_036956196.1 mRNA upstream 8138 32703780 ~ 32736730 (+) False LOC110499338
XM_036956203.1 mRNA downstream 2372 32747591 ~ 32760047 (+) True LOC110499341
XM_021576428.2 mRNA downstream 104478 32849697 ~ 32863389 (+) True LOC110499344
XM_036956206.1 mRNA downstream 317816 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 439845 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 471053 33216272 ~ 33262134 (+) False LOC110499352
TU1928807 other upstream 83220 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3168310 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3168310 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3286947 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3966459 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 432074 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1580618 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2636490 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2636490 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2936148 35681367 ~ 35682437 (+) True G1689347

Expression Profile