RNA id: TU1928865


Basic Information

Item Value
RNA id TU1928865
length 236
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1686371
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32787537 ~ 32787772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctgtctctctctctgtctgtctctctctctctgtctctctgtctctctctccctctctctctctctctctctctctctgtctgtgtctctgtctgtctgtctctctctctgtctctctctccctctctctgtctgtgtctctatctgtctgtctctctctctccctctatgtctctctctctctccctctctctctgtctctctctgtctgtctgtctgtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928861 lncRNA upstream 10256 32777075 ~ 32777281 (+) True G1686367
TU1928860 lncRNA upstream 10867 32776420 ~ 32776670 (+) True G1686366
TU1928858 lncRNA upstream 11948 32775380 ~ 32775589 (+) True G1686364
TU1928856 lncRNA upstream 14924 32772228 ~ 32772613 (+) True G1686362
TU1928845 lncRNA upstream 42318 32744868 ~ 32745219 (+) True G1686352
TU1928874 lncRNA downstream 12180 32799952 ~ 32800295 (+) True G1686380
TU1928878 lncRNA downstream 17560 32805332 ~ 32805587 (+) True G1686384
TU1928887 lncRNA downstream 33260 32821032 ~ 32821305 (+) True G1686391
TU1928891 lncRNA downstream 40373 32828145 ~ 32828568 (+) True G1686395
TU1928898 lncRNA downstream 50802 32838574 ~ 32839040 (+) True G1686402
XM_036956203.1 mRNA upstream 27490 32747591 ~ 32760047 (+) True LOC110499341
XM_036956199.1 mRNA upstream 50807 32703738 ~ 32736730 (+) False LOC110499338
XM_021576428.2 mRNA downstream 61925 32849697 ~ 32863389 (+) True LOC110499344
XM_036956206.1 mRNA downstream 275263 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 397292 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 428500 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 687168 33474940 ~ 33517443 (+) False LOC110499354
TU1928807 other upstream 125889 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3210979 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3210979 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3329616 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4009128 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 389521 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1538065 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2593937 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2593937 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2893595 35681367 ~ 35682437 (+) True G1689347

Expression Profile