RNA id: TU1928874


Basic Information

Item Value
RNA id TU1928874
length 344
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1686380
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32799952 ~ 32800295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATggattagaaacattgtttgacatgtttctacgaactttaatggaacttttttgacttttcgtctggactttgTGAGTGCGCtttgtgcatttggattactggactaaacATGCGAACAAAAAGGaaaaggtatttggacataaagatgaactttatcgaacaaaacaaacatttattgtttaacatggagacctgggagtgccatcagatgaagatcatcaaaggtaagtgattcattttaacgctatttctgacttttgtgacacctctccttggttggaaaatggctgtatggttttctgtggctaggcgcggacctaacataatgatatgttctgcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928865 lncRNA upstream 12180 32787537 ~ 32787772 (+) True G1686371
TU1928861 lncRNA upstream 22671 32777075 ~ 32777281 (+) True G1686367
TU1928860 lncRNA upstream 23282 32776420 ~ 32776670 (+) True G1686366
TU1928858 lncRNA upstream 24363 32775380 ~ 32775589 (+) True G1686364
TU1928856 lncRNA upstream 27339 32772228 ~ 32772613 (+) True G1686362
TU1928878 lncRNA downstream 5037 32805332 ~ 32805587 (+) True G1686384
TU1928887 lncRNA downstream 20737 32821032 ~ 32821305 (+) True G1686391
TU1928891 lncRNA downstream 27850 32828145 ~ 32828568 (+) True G1686395
TU1928898 lncRNA downstream 38279 32838574 ~ 32839040 (+) True G1686402
TU1928882 lncRNA downstream 40005 32840300 ~ 32840938 (+) True G1686386
XM_036956203.1 mRNA upstream 39905 32747591 ~ 32760047 (+) True LOC110499341
XM_036956199.1 mRNA upstream 63222 32703738 ~ 32736730 (+) False LOC110499338
XM_021576428.2 mRNA downstream 49402 32849697 ~ 32863389 (+) True LOC110499344
XM_036956206.1 mRNA downstream 262740 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 384769 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 415977 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 674645 33474940 ~ 33517443 (+) False LOC110499354
TU1928807 other upstream 138304 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3223394 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3223394 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3342031 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4021543 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 376998 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1525542 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2581414 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2581414 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2881072 35681367 ~ 35682437 (+) True G1689347

Expression Profile