RNA id: TU1928898


Basic Information

Item Value
RNA id TU1928898
length 467
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1686402
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32838574 ~ 32839040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgacaacctgatccaggttgcaggcactggttacagtttgttacaagttttttcctgagtgggcagcttgatgatagccaatcaatatttaaatcacccagaaaatatacttctctgttgatatcacatacattatcaagcatttcacacatattatccagatactgaatgttagcacttggtggtctatagcagattcccaccagaatgggctttaggtgaggcagattaacctgtagccatattacttcaacagtatttaacattagatcgtctctaagctttacaggaatgtggttctgaatatagacgcAACACCGCctccgttggcatttctgtctttttggTAGAtattatatccttgtattgctaccactgtatcatcaaaggatttatctaagtgagtttcagagatagtcagaatatgaatgtcatctgttacaagcaagttattgacttcatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928891 lncRNA upstream 10006 32828145 ~ 32828568 (+) True G1686395
TU1928887 lncRNA upstream 17269 32821032 ~ 32821305 (+) True G1686391
TU1928878 lncRNA upstream 32987 32805332 ~ 32805587 (+) True G1686384
TU1928874 lncRNA upstream 38279 32799952 ~ 32800295 (+) True G1686380
TU1928865 lncRNA upstream 50802 32787537 ~ 32787772 (+) True G1686371
TU1928882 lncRNA downstream 1260 32840300 ~ 32840938 (+) True G1686386
TU1929044 lncRNA downstream 7987 32847027 ~ 32847375 (+) True G1686518
TU1929051 lncRNA downstream 25852 32864892 ~ 32868963 (+) True G1686524
TU1929105 lncRNA downstream 115249 32954289 ~ 33058087 (+) False G1686563
TU1929109 lncRNA downstream 121819 32960859 ~ 32965536 (+) True G1686566
XM_036956203.1 mRNA upstream 78527 32747591 ~ 32760047 (+) True LOC110499341
XM_036956199.1 mRNA upstream 101844 32703738 ~ 32736730 (+) False LOC110499338
XM_021576428.2 mRNA downstream 10657 32849697 ~ 32863389 (+) True LOC110499344
XM_036956206.1 mRNA downstream 223995 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 346024 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 377232 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 635900 33474940 ~ 33517443 (+) False LOC110499354
TU1928807 other upstream 176926 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3262016 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3262016 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3380653 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4060165 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 338253 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1486797 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2542669 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2542669 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2842327 35681367 ~ 35682437 (+) True G1689347

Expression Profile