RNA id: TU1929039


Basic Information

Item Value
RNA id TU1929039
length 758
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1686513
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32839390 ~ 32840147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccggataagacaagataaatactccagatataacagactgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgatgatacccccggacagggccaaacaggtaggatataaccccacccactttgccaaagcacagcccccacaccactagaaggatatcttcaaccaccaacttaccatcctgagacaaggcagagtatagcccacaaagatctccgccacagcacaacccaaggggtggCGCCAACCCCGACAGGAAGGATTGGcgccactcaagtgacgcacccctcctagggacggcatggaagagcaccagtaagccagtgactcagcccctgtaatagggttagaagcAGAGAATCCTAGTGGGATgaacctttctttaactaggcacgtcagtttaagaacaaattattatttacaatgacggcctaccccccggccaaaccctcccttaacctggatgacgctgggccaattgtgcgccgacctacgggactcccagtcacggtcGGTTGTGACAGCCTCGGAACGAAtgagggtctgtagtgacacctctataTATAAATGtctggaatatttcaattttggagaatctcttatacaatggtTTAAAGTTAGGTATAGTAACctcaggtgtaaaatagtaaataatggctacttctcagaaagtttgaaactgtcaagaggagtcacttttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929033 lncRNA downstream 18130 32821021 ~ 32821260 (-) True G1686507
TU1928980 lncRNA downstream 30857 32807511 ~ 32808533 (-) True G1686474
TU1929024 lncRNA downstream 44266 32794915 ~ 32795124 (-) True G1686498
TU1929019 lncRNA downstream 53027 32786161 ~ 32786363 (-) True G1686493
TU1929018 lncRNA downstream 61089 32777871 ~ 32778301 (-) True G1686492
TU1929041 lncRNA upstream 2080 32842227 ~ 32843107 (-) True G1686515
TU1929045 lncRNA upstream 5708 32845855 ~ 32847331 (-) True G1686519
TU1929380 lncRNA upstream 21068 32861215 ~ 32864219 (-) False G1686804
TU1929385 lncRNA upstream 21068 32861215 ~ 32864219 (-) False G1686804
TU1929379 lncRNA upstream 24737 32864884 ~ 32868305 (-) True G1686804
XM_021576426.2 mRNA downstream 18376 32816387 ~ 32821014 (-) True LOC110499343
XM_021576425.2 mRNA downstream 26391 32810995 ~ 32812999 (-) False LOC110499342
XR_005037980.1 mRNA downstream 134937 32703449 ~ 32704453 (-) True LOC110499340
XR_002469938.2 mRNA downstream 134940 32702718 ~ 32704450 (-) False LOC110499340
XM_021576419.2 mRNA downstream 150964 32676370 ~ 32688426 (-) True LOC110499337
XM_036956204.1 mRNA upstream 30368 32870515 ~ 32896733 (-) False LOC110499345
XM_036956205.1 mRNA upstream 30368 32870515 ~ 32902674 (-) True LOC110499345
XR_005037981.1 mRNA upstream 88858 32929005 ~ 32940772 (-) True LOC118942059
XM_036956207.1 mRNA upstream 323548 33163695 ~ 33175005 (-) True st3gal7
XM_021576434.2 mRNA upstream 364048 33204195 ~ 33210568 (-) False morn4
TU1928979 other downstream 26536 32811707 ~ 32812854 (-) True LOC110499342
TU1927277 other downstream 1426546 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1725704 31111555 ~ 31113686 (-) True G1684661
TU1925350 other downstream 3293073 29541348 ~ 29546317 (-) False LOC110499315
TU1929489 other upstream 237663 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 693526 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 703539 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 2418842 35258989 ~ 35259818 (-) True G1689130
TU1931971 other upstream 2419739 35259886 ~ 35260208 (-) True G1689131

Expression Profile