RNA id: TU1928882


Basic Information

Item Value
RNA id TU1928882
length 639
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1686386
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32840300 ~ 32840938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctgagaacctgagccctaggaccatgcctcaggactacctgacatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaagtgttctgcctgcggccatggaaccctgacctgttcaccggacgtgctacctgtcccagacctgctgttttcaactccctagagacagcaggagcggtagagattctcttaatgatcggctgtgaaaagccaactgacatttactcctgaggtgctgacttgttgcacccttgacaactactgtgattattattatttgaccctgctggtcatttatgaacattggaacatcttggccatgttctgttataatctccacccagcacagccagaagaggactggccacccctcatagcctggtccctctctaggtttcttcctaggttttggcctttctagggagtttttcctagtcactgTGATTCTACTCCTGCATttctttctgtttggggttttaggctgggtttctttacagcactttgagatatcagttgatgtaagaagggctatataaatacatttgatttgcttTGATTTTAATATATGAATTCCAGTCATACTTTATCAGAAGCCTTTCAAAGTCAGTTTTGAATACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928898 lncRNA upstream 1260 32838574 ~ 32839040 (+) True G1686402
TU1928891 lncRNA upstream 11732 32828145 ~ 32828568 (+) True G1686395
TU1928887 lncRNA upstream 18995 32821032 ~ 32821305 (+) True G1686391
TU1928878 lncRNA upstream 34713 32805332 ~ 32805587 (+) True G1686384
TU1928874 lncRNA upstream 40005 32799952 ~ 32800295 (+) True G1686380
TU1929044 lncRNA downstream 6089 32847027 ~ 32847375 (+) True G1686518
TU1929051 lncRNA downstream 23954 32864892 ~ 32868963 (+) True G1686524
TU1929105 lncRNA downstream 113351 32954289 ~ 33058087 (+) False G1686563
TU1929109 lncRNA downstream 119921 32960859 ~ 32965536 (+) True G1686566
TU1929114 lncRNA downstream 120844 32961782 ~ 32962946 (+) True G1686571
XM_036956203.1 mRNA upstream 80253 32747591 ~ 32760047 (+) True LOC110499341
XM_036956199.1 mRNA upstream 103570 32703738 ~ 32736730 (+) False LOC110499338
XM_021576428.2 mRNA downstream 8759 32849697 ~ 32863389 (+) True LOC110499344
XM_036956206.1 mRNA downstream 222097 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 344126 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 375334 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 634002 33474940 ~ 33517443 (+) False LOC110499354
TU1928807 other upstream 178652 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3263742 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3263742 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3382379 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4061891 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 336355 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1484899 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2540771 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2540771 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2840429 35681367 ~ 35682437 (+) True G1689347

Expression Profile