RNA id: TU1929094


Basic Information

Item Value
RNA id TU1929094
length 5097
lncRNA type inter_gene
GC content 0.44
exon number 6
gene id G1686563
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32954289 ~ 33058087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taacctgctgtagtagagagagagacattatcatgctgtagtagagagagagagagacattaacctgctgttgtagagagagagacattaacctgctgtagtagagagagagattaacctgctgttgtagagagagagagaccttaacctgctgttgtagagagagagacattaacctgctgtagtagagagagagacattaacctgctgttgtagagagagagacattaatctgctgttgtggagagagagagacattaacctgctgtagtagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagagagagagacattaacctgctgtagtttagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgttgtagagagagagagagacaataactGCTGTtttgtggtgagagagagagacattcacctatgtggtggagagagagagacattaacctgctgttgtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagatagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacattaaccttctgttgtagagagagagagagagagatattaacccactgttgtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacattaaccttctgttgtagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagacatcaacctgctgtagtagagagagagacattaacctgctgttgtagagagagacattaacctgctgttgtagagagagagacattaatctgctgttgtggagagagagagacattaacctgctgtagtagagagagagacattaacctgctgttgtggagagagagagacattcacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagatagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacattaaccttctgttgtagagagagagagagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagggagagagacattaacctgctgtaagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgttgtagagagagagagagacattaacctgctgttgtagagatagagagagacattaacctgctgttgtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagagagagagacattaacctgctgtagtttagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgttgtagagagagagagagacattaactgCTGTtttgtggtgagagagagagacattcacctatgtggtggagagagagagacattaacctgctgttgtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgcggtagtagagagagagacattaacctgctgtagtagagagagagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagacatcaacctgctgtagtagagagagagattaacctgctgttgtagagagagagacattaacctgctgttgtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtagagagagaccttaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacattaaccttctgttgtagagagagagagagagagagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacatcaacctgctgtagtagagagagagacattaacctgctgttgtagagagagacattaacctgctgttgtagagagagagacattaatctgctgttgtggagagagagagacattaacctgctgtagtagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgttgtagtagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagacattaaccttctgttgtagagagagagagagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagagagagacattaacctgctgtagtagagagagagacatcaacctgctgtagtagagagagagattaacctgctgttgtagagagagagacattaacctgctgttgtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtagagagagacattaacctgctgttgtagagagagagagaggcattaacctgctgtaaaagagagagagagacattatcctgctgtagtagagagagagacattaacctgctgttgtagagagagagacattaacctgctgtagtagagagagagagacattatcctgctgtagtagagagagagacattaacctgctatagtagagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctatagtagagagagagagagacattaacctgctgttgtagagagagagagagacattaacctgctgttgtagagatagagagagacattgacctgctgttgtagagagagagagagacattaacctgttgtaagagagagagagagagagacattaacctgctgtagtagagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagacatcaacctgctgtagtagagagagagacattaacctgctgttgtagagagagagacattaatctgctgttgtggagagagagagacattaacctgctgtagtagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgttgtggagagagagacattaacctgctgtagtagagagagagagagacattaatctgctgttgtagagagataAAGTATTTGTCTAATTTATTGTGCTTCTGCTCCTCTTGCTTTGCACTATCCTGGAGCGTGTTGCGTGTAGCTTGTTATTTGCCATAAGTCATAAGTCTTCAAAGCGGCATTAGGCTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929124 lncRNA upstream 7145 33009409 ~ 33016212 (+) True G1686579
TU1929106 lncRNA upstream 12744 33002957 ~ 33010613 (+) False G1686563
TU1929100 lncRNA upstream 21404 32993210 ~ 33001953 (+) False G1686563
TU1929110 lncRNA upstream 30239 32982067 ~ 32993118 (+) True G1686567
TU1929103 lncRNA upstream 42276 32978082 ~ 32981081 (+) False G1686563
TU1929138 lncRNA downstream 15240 33073327 ~ 33073570 (+) True G1686593
TU1929139 lncRNA downstream 16321 33074408 ~ 33074618 (+) True G1686594
TU1929142 lncRNA downstream 19446 33077533 ~ 33077836 (+) True G1686597
TU1929154 lncRNA downstream 41425 33099512 ~ 33099734 (+) True G1686607
TU1929164 lncRNA downstream 64740 33122827 ~ 33123160 (+) True G1686616
XM_021576428.2 mRNA upstream 159968 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 263310 32747591 ~ 32760047 (+) True LOC110499341
XM_036956201.1 mRNA upstream 286627 32703738 ~ 32736730 (+) False LOC110499338
XM_036956206.1 mRNA downstream 4948 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 126977 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 158185 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 416853 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 416853 33474940 ~ 33517443 (+) False LOC110499354
TU1928807 other upstream 361709 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3446799 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3446799 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3565436 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4244948 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 119206 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1267750 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2323622 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2323622 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2623280 35681367 ~ 35682437 (+) True G1689347

Expression Profile