RNA id: TU1929110


Basic Information

Item Value
RNA id TU1929110
length 1493
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1686567
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32982067 ~ 32993118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagacattaacctgctgtagtagaaagagagagacattaacctgctgtagtagaagagagagacattaacctgctgtagtagaagagagagacattaacctgctgtagtagagagagagacattaacatgctgtagtagagagagacattaacctgctgtagtagagagagagacattaatctgctgtagaagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagaagagagagagagattaacctgctgtagtagagagagagacattaacctgctgtagaagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagaagagagagagagattaatctgctgtagaagagagagagacattaacctgctgtagtagagagagagagacattaacctgctatagtagagagagagagactttaacctgctgtagtagagagagagagacattaacctgctgtagaagagagagagagacattaacctgctatagtagagagagagagacattaacctgctgtagaagagagagagagacattaacctgctgtagtagagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagaagagagagagacattaacctgctatagtagagagagagagagacattaacctgctatagtagagagagagagagattaacctgctgtaatagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagaagagagagagacattaacctgctgtaatagagagagacattaacctgctatattagagagagagagagagagacattaacctgctggagtagagagagagagagacattaacctgctggagtagagagagagagagagagagagacattacactgctgtaatagagggagagagacactaacctgctgtaggagagagagagagagacattaacctgttatagtagagagagagagagagagagagagagagagagagacattaacctgctgtagtagagagagagacattaacctgctatattagagagagagagagagagagagagacattaacctgctggagtagagagagagatagacattaacctgctggagtagagagagtgagatttTAACCtgctggagtagagagagagacattaacatgctgtagtatagagagagacattaacctgctgtagaagagagagagacattaacctgctgtagtagagagcgagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagagacattaacctgctgtagtagagagagagacattaacctgctgtagtagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929103 lncRNA upstream 986 32978082 ~ 32981081 (+) False G1686563
TU1929104 lncRNA upstream 11572 32968166 ~ 32970495 (+) False G1686563
TU1929109 lncRNA upstream 16531 32960859 ~ 32965536 (+) True G1686566
TU1929114 lncRNA upstream 19121 32961782 ~ 32962946 (+) True G1686571
TU1929051 lncRNA upstream 113104 32864892 ~ 32868963 (+) True G1686524
TU1929100 lncRNA downstream 92 32993210 ~ 33001953 (+) False G1686563
TU1929102 lncRNA downstream 92 32993210 ~ 33055076 (+) False G1686563
TU1929101 lncRNA downstream 9839 33002957 ~ 33040810 (+) False G1686563
TU1929106 lncRNA downstream 9839 33002957 ~ 33010613 (+) False G1686563
TU1929099 lncRNA downstream 13284 33006402 ~ 33058087 (+) False G1686563
XM_021576428.2 mRNA upstream 118678 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 222020 32747591 ~ 32760047 (+) True LOC110499341
XM_036956201.1 mRNA upstream 245337 32703738 ~ 32736730 (+) False LOC110499338
XM_036956206.1 mRNA downstream 69917 33063035 ~ 33132825 (+) True LOC110499532
XR_005037982.1 mRNA downstream 191946 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 223154 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 481822 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 481822 33474940 ~ 33517443 (+) False LOC110499354
TU1928807 other upstream 320419 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3405509 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3405509 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3524146 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4203658 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 184175 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1332719 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2388591 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2388591 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2688249 35681367 ~ 35682437 (+) True G1689347

Expression Profile