RNA id: TU1929076


Basic Information

Item Value
RNA id TU1929076
length 467
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1686547
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33133387 ~ 33133853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGCCTGTCCTTGTGTACCATGTCCCTCTGagatttgttttttaaatcagcTTGGCTTACAGCTATACATAAACTGTTCATTGGGAATCGCTTTGTGGTATTGTGGTGGGTTTGTTGTCTGAAGGACAGTTGAAGGCAGAGATGCACAGCAGAGTGTTCAGCTTCAGACAGAAATGAAAGGGAGAGTCGGTTACTGGTTCAATGTTTTTCTGTAACAGGAAAACAACAAATATTGCATTTACAGTATTTTGCTCTAGGTGCACAGAGCTGGGTCGCTATGAACACATGTTACTAAAACACTATTCTAGTCAATCAACCTCTCATTCAGATTCATCACTGCATATCCAGTCCCATGTACAGGTATATTATGCTGCTAGCCTTTATGATAAATATGAAGTATTACTATTAATAATATTAAATATGACTTATTAAGTTTGGATTGTTTTATTCCATTAGTCGGTGTATC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929164 lncRNA upstream 10227 33122827 ~ 33123160 (+) True G1686616
TU1929154 lncRNA upstream 33653 33099512 ~ 33099734 (+) True G1686607
TU1929142 lncRNA upstream 55551 33077533 ~ 33077836 (+) True G1686597
TU1929139 lncRNA upstream 58769 33074408 ~ 33074618 (+) True G1686594
TU1929138 lncRNA upstream 59817 33073327 ~ 33073570 (+) True G1686593
TU1929078 lncRNA downstream 58 33133911 ~ 33134197 (+) True G1686549
TU1929178 lncRNA downstream 11147 33145000 ~ 33145201 (+) True G1686630
TU1929179 lncRNA downstream 12626 33146479 ~ 33146716 (+) True G1686631
TU1929180 lncRNA downstream 12885 33146738 ~ 33147091 (+) True G1686632
TU1929187 lncRNA downstream 33343 33167196 ~ 33169029 (+) False G1686636
XM_036956206.1 mRNA upstream 562 33063035 ~ 33132825 (+) True LOC110499532
XM_021576428.2 mRNA upstream 269998 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 373340 32747591 ~ 32760047 (+) True LOC110499341
XM_036956201.1 mRNA upstream 396657 32703738 ~ 32736730 (+) False LOC110499338
XR_005037982.1 mRNA downstream 51211 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 82419 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 341087 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 341087 33474940 ~ 33517443 (+) False LOC110499354
XR_005037984.1 mRNA downstream 341455 33475308 ~ 33517443 (+) True LOC110499354
TU1928807 other upstream 471739 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3556829 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3556829 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3675466 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4354978 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 43440 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1191984 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2247856 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2247856 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2547514 35681367 ~ 35682437 (+) True G1689347

Expression Profile