RNA id: TU1929180


Basic Information

Item Value
RNA id TU1929180
length 354
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1686632
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33146738 ~ 33147091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctacctcattcccatactgtttttattttatttatttttctgctcttttgcacaccagtatctctacttgcacatcatcatctgctcatttatcactccagtgttaatctgctcaattgtaactattcgctcctatggcctatttattgcctacctcctcatgcctttagactttattttttctactgtgtcattgatttgtttattgtgttattggcttgtttattgtttactccatgtgtaactttgtgttgtctgtgtcacactgctttgctttatcttggccaggtcacagttgtaaatgagagcttgttctcaactagcctacctggttaaataaaggtgttctcaact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929179 lncRNA upstream 22 33146479 ~ 33146716 (+) True G1686631
TU1929178 lncRNA upstream 1537 33145000 ~ 33145201 (+) True G1686630
TU1929078 lncRNA upstream 12541 33133911 ~ 33134197 (+) True G1686549
TU1929076 lncRNA upstream 12885 33133387 ~ 33133853 (+) True G1686547
TU1929164 lncRNA upstream 23578 33122827 ~ 33123160 (+) True G1686616
TU1929187 lncRNA downstream 20105 33167196 ~ 33169029 (+) False G1686636
TU1929186 lncRNA downstream 21358 33168449 ~ 33169029 (+) True G1686636
TU1929191 lncRNA downstream 26951 33174042 ~ 33175013 (+) True G1686640
TU1929213 lncRNA downstream 57197 33204288 ~ 33205058 (+) True G1686659
TU1929209 lncRNA downstream 69214 33216305 ~ 33248974 (+) True LOC110499352
XM_036956206.1 mRNA upstream 13913 33063035 ~ 33132825 (+) True LOC110499532
XM_021576428.2 mRNA upstream 283349 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 386691 32747591 ~ 32760047 (+) True LOC110499341
XM_036956196.1 mRNA upstream 410008 32703780 ~ 32736730 (+) False LOC110499338
XR_005037982.1 mRNA downstream 37973 33185064 ~ 33196167 (+) False LOC118942060
XM_021576436.2 mRNA downstream 69181 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 327849 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 327849 33474940 ~ 33517443 (+) False LOC110499354
XR_005037984.1 mRNA downstream 328217 33475308 ~ 33517443 (+) True LOC110499354
TU1928807 other upstream 485090 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3570180 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3570180 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3688817 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4368329 28778006 ~ 28778409 (+) True G1681792
TU1929194 other downstream 30202 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1178746 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2234618 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2234618 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2534276 35681367 ~ 35682437 (+) True G1689347

Expression Profile