RNA id: TCONS_00005993


Basic Information

Item Value
RNA id TCONS_00005993
length 791
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_002561
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6610157 ~ 6611065 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaatgttcaaacgtttatctgcctcctagagtctttctggtagaacaaTTTTTCTCGCTCTGGAGCTTCTGTTAAGAAATCTATGAGTAAAttataactttaaacatttaacaacaaTTTTTCATATGAACTGAGTAATTTCTGTTTGTGAATTGGCAGTCGTTTCACAGGAAATTGTTATTGGAACAGGCCCTTTCTTAACAAGCTCAGAGTGCTCATCATCTGACGAGTGTTTTGGTGAGACAGCAGGAGGAAGCTGCGTTTCGTTGTTTGTCATATTTAtaccttttttttctaaatgttctCAATTCTTACTCCTGCACGCTTCACCTGCCTCTACTCTGATTTCTGGCAGACTGGTGTCACTAAAatctctgtgattgtgaacaacagcaagaaaataaaaaacgGTCCATTTGAAATAATCCTTCTGAAAGTGTGATGAAAGTGAgcagtaaaagtgtttttttgtttgtgattttATATTTAACCTCAAGCCATTCCAGACCCAGGAGTGCTGCTTTCACCCAGACAGCAGCTCTGGACACAGACACACAGGACGGCACCGCTGAGCTTCCTGGATATTTGGCTCCTCTGTCTTCACATTTGGCTgattctgcatccacagaccagAGGAACAGCAAGAGAAAAAGGCAAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCggccaaacgctctcgcagagacttgtacctgaagggcccgttgctggggcgaggtggattcggctctgGGTTTGCTGGGGtccgcaggtctga

Function

GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004764 lncRNA downstream 32692 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005992 lncRNA downstream 200360 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00005991 lncRNA downstream 572411 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005990 lncRNA downstream 755032 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005989 lncRNA downstream 820006 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00005994 lncRNA upstream 82449 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004778 lncRNA upstream 175443 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005995 lncRNA upstream 439260 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00005996 lncRNA upstream 627179 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00004792 lncRNA upstream 1013023 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00004762 mRNA downstream 21364 6521376 ~ 6588793 (-) False XLOC_002560
TCONS_00004763 mRNA downstream 23091 6522567 ~ 6587066 (-) False XLOC_002560
TCONS_00004761 mRNA downstream 116087 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004758 mRNA downstream 155771 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004757 mRNA downstream 182795 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004772 mRNA upstream 154044 6765109 ~ 6775271 (-) True XLOC_002567
TCONS_00004773 mRNA upstream 170058 6781123 ~ 6867282 (-) False XLOC_002568
TCONS_00004774 mRNA upstream 171442 6782507 ~ 6867282 (-) False XLOC_002568
TCONS_00004779 mRNA upstream 356228 6967293 ~ 6976645 (-) True XLOC_002569
TCONS_00004781 mRNA upstream 673056 7284121 ~ 7386475 (-) False XLOC_002573
TCONS_00004760 other downstream 137325 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004759 other downstream 178869 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004756 other downstream 659579 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004738 other downstream 1585872 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 1587743 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004765 other upstream 10 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 11504 6622569 ~ 6623404 (-) False XLOC_002562
TCONS_00004767 other upstream 26665 6637730 ~ 6639167 (-) True XLOC_002562
TCONS_00004768 other upstream 49994 6661059 ~ 6662868 (-) True XLOC_002563
TCONS_00004769 other upstream 66608 6677673 ~ 6679486 (-) True XLOC_002564

Expression Profile

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