RNA id: TU1929263


Basic Information

Item Value
RNA id TU1929263
length 471
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1686708
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33360489 ~ 33360959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccatcccagtctcagatcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccatgtccctgctgaagaaaagcaggcccaaaccatgatgctgccactaccatgtttgacagtggggatgatgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcgattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacgacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929255 lncRNA upstream 40480 33319795 ~ 33320009 (+) True G1686700
TU1929254 lncRNA upstream 43226 33317018 ~ 33317263 (+) True G1686699
TU1929212 lncRNA upstream 92048 33267818 ~ 33268441 (+) True G1686658
TU1929209 lncRNA upstream 111515 33216305 ~ 33248974 (+) True LOC110499352
TU1929213 lncRNA upstream 155431 33204288 ~ 33205058 (+) True G1686659
TU1929265 lncRNA downstream 5823 33366782 ~ 33366998 (+) True G1686710
TU1929266 lncRNA downstream 7629 33368588 ~ 33368832 (+) True G1686711
TU1929268 lncRNA downstream 11082 33372041 ~ 33372575 (+) True G1686713
TU1929279 lncRNA downstream 46227 33407186 ~ 33407585 (+) True G1686724
TU1929287 lncRNA downstream 64895 33425854 ~ 33454646 (+) True G1686730
XM_021576436.2 mRNA upstream 98355 33216272 ~ 33262134 (+) False LOC110499352
XR_005037982.1 mRNA upstream 164322 33185064 ~ 33196167 (+) False LOC118942060
XM_036956206.1 mRNA upstream 227664 33063035 ~ 33132825 (+) True LOC110499532
XM_021576428.2 mRNA upstream 497100 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 600442 32747591 ~ 32760047 (+) True LOC110499341
XR_005037985.1 mRNA downstream 113981 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 113981 33474940 ~ 33517443 (+) False LOC110499354
XR_005037984.1 mRNA downstream 114349 33475308 ~ 33517443 (+) True LOC110499354
XR_005037983.1 mRNA downstream 167839 33528798 ~ 33529479 (+) False LOC118942063
XR_005037988.1 mRNA downstream 300362 33661321 ~ 33787514 (+) False LOC110499362
TU1929194 other upstream 175213 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 698841 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3783931 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3783931 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3902568 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 964878 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2020750 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2020750 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2320408 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 2340261 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile