RNA id: TU1929279


Basic Information

Item Value
RNA id TU1929279
length 400
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1686724
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33407186 ~ 33407585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttatgctgcagtagtttatgtgtcggggggctagggtcagtttgttatatctggagtacttctcctgtcttatccggtgtcctgtgtgaatttaagtatgctctctctaattctctctttctctctttctttctctctctctgaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtacacctggccgtgctactgctccagtttcaactgttctgcctgtgattattattatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929268 lncRNA upstream 34611 33372041 ~ 33372575 (+) True G1686713
TU1929266 lncRNA upstream 38354 33368588 ~ 33368832 (+) True G1686711
TU1929265 lncRNA upstream 40188 33366782 ~ 33366998 (+) True G1686710
TU1929263 lncRNA upstream 46227 33360489 ~ 33360959 (+) True G1686708
TU1929255 lncRNA upstream 87177 33319795 ~ 33320009 (+) True G1686700
TU1929287 lncRNA downstream 18269 33425854 ~ 33454646 (+) True G1686730
TU1929302 lncRNA downstream 47114 33454699 ~ 33454923 (+) True G1686745
TU1929305 lncRNA downstream 53017 33460602 ~ 33460804 (+) True G1686748
TU1929320 lncRNA downstream 69032 33476617 ~ 33477147 (+) True G1686758
TU1929321 lncRNA downstream 80594 33488179 ~ 33502409 (+) True G1686759
XM_021576436.2 mRNA upstream 145052 33216272 ~ 33262134 (+) False LOC110499352
XR_005037982.1 mRNA upstream 211019 33185064 ~ 33196167 (+) False LOC118942060
XM_036956206.1 mRNA upstream 274361 33063035 ~ 33132825 (+) True LOC110499532
XM_021576428.2 mRNA upstream 543797 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 647139 32747591 ~ 32760047 (+) True LOC110499341
XR_005037985.1 mRNA downstream 67355 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 67355 33474940 ~ 33517443 (+) False LOC110499354
XR_005037984.1 mRNA downstream 67723 33475308 ~ 33517443 (+) True LOC110499354
XR_005037983.1 mRNA downstream 121213 33528798 ~ 33529479 (+) False LOC118942063
XR_005037988.1 mRNA downstream 253736 33661321 ~ 33787514 (+) False LOC110499362
TU1929194 other upstream 221910 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 745538 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3830628 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3830628 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3949265 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 918252 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1974124 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1974124 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2273782 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 2293635 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile