RNA id: TU1930124


Basic Information

Item Value
RNA id TU1930124
length 425
lncRNA type intronic
GC content 0.50
exon number 1
gene id G1687463
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33868817 ~ 33869241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTGGGGGCTGTACAGCCTGTTAGTTAATGCATTGTCTACCCTGGAGGCTGTACAGCCTGTTAGTTAATGCAGTGTCTACTCTGGGGGCTAACTGTACAGCCTGTTAGTTAATGCATTGTATGCCCTGGGGGCTTACTGTACAGCCTGTTAGTTAATGCAGTGTCTACCCTGGGGGCTGTACAGCCTGTTAGTTAATGCAGTGTCTACCCTGGGGGCTGTACAGCCTGTTAGTTAATGCATTGTCTGCCCTGGGGGCTTACTGTATAGCCTGCTAGTTAATGCATTGTCTGCCCTGGGGGCTTACTATACAGCCTGTTAGTTAATGCATTGTCTGCCCTGGGGGCTTACTGTACAGCCTGTTAGTTAATGCATTGTCTGCCCTGGGGGCTTACTGTACAGCCTGCTAGTTAATGCATTGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930117 lncRNA upstream 5425 33863136 ~ 33863392 (+) True G1687456
TU1930100 lncRNA upstream 13907 33854638 ~ 33854910 (+) True G1687439
TU1929859 lncRNA upstream 178914 33689435 ~ 33689903 (+) True G1687212
TU1929835 lncRNA upstream 208963 33659402 ~ 33659854 (+) True G1687188
TU1929803 lncRNA upstream 231461 33637138 ~ 33637356 (+) True G1687156
TU1930157 lncRNA downstream 26493 33895734 ~ 33895971 (+) True G1687496
TU1930212 lncRNA downstream 97858 33967099 ~ 33970046 (+) False G1687545
TU1930210 lncRNA downstream 99863 33969104 ~ 33970046 (+) False G1687545
TU1930211 lncRNA downstream 99863 33969104 ~ 33970046 (+) True G1687545
TU1930277 lncRNA downstream 151219 34020460 ~ 34020756 (+) True G1687581
XR_005037988.1 mRNA upstream 81303 33661321 ~ 33787514 (+) False LOC110499362
XM_036956221.1 mRNA upstream 93050 33661594 ~ 33775767 (+) False LOC110499362
XM_036956222.1 mRNA upstream 93050 33661594 ~ 33775767 (+) True LOC110499362
XR_005037983.1 mRNA upstream 339338 33528798 ~ 33529479 (+) False LOC118942063
XR_005037985.1 mRNA upstream 351374 33474940 ~ 33517443 (+) False LOC110499354
XM_036956223.1 mRNA downstream 80511 33949752 ~ 33958728 (+) False rab23
XM_021576451.2 mRNA downstream 80512 33949753 ~ 33958728 (+) False rab23
XM_021576452.2 mRNA downstream 80512 33949753 ~ 33958728 (+) True rab23
XM_036956226.1 mRNA downstream 115225 33984466 ~ 34178931 (+) True LOC110499368
XM_021576467.2 mRNA downstream 314839 34184080 ~ 34208986 (+) False zmp:0000000760
TU1929194 other upstream 683541 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1207169 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4292259 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 4292259 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 4410896 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 456596 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1512468 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1512468 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1812126 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1831979 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile