RNA id: TU1930212


Basic Information

Item Value
RNA id TU1930212
length 2792
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1687545
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33967099 ~ 33970046 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taatctgaatAAGAATGCCATGTTTCAACATCAGTGACTTGcttaaaaaaatatctaaatatgTGTTAATGGACATATAAAATGACTGCCTAGTATCCTATTCTGTATGTGCATGTGCTTGTGTTGCGTACTCTGCACCTGCATGTGAAATGCCTATTCATGATGTATTGACATGGTACATTGTCTCTAATGAGGTCTCACAGATAGTACTGTTACTTTGGCTATTTCTGGACTGGTCGTTCAcaagtacatacagttgaagtcggaagtttacatacactttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctaggaaaaattccctgttttaggtcagttaggatcaccactttattttaagaatgtgtaatgtcagaataatagtaaagagaataatttatttcattacattcccagtgggtcagatgttcacatacactcaattagtatttggtagtattgcctttaaattgtttaacttgggtctaaCGTTTCAgttagccttccaaaagcttcccacaataagttgggtgaattttggcccattcctccagacagagctggtgtaactgaatcaggtttgtaggcctccttgctcgcacacactttttcagttctgcccacacatgttctataggattgaggtcagggctttgtaatggccactccaattccttgactttgttttcctgaaaccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagatacatttgcgaccaagctttaacttccttactgatgtcttgagatgattcttcaatatatccacataataattcttcctcatgatgccatctactttgtgaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgcacccccgtgctttacggttgggatggtgttcttcggtttgcaagcctccccctttttcctccaagcataacgatggtcattatggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtaccatccaTGTGgggttgcaaaccgtagtctggctttggtTATGGCGGTTTCCTCTATGAGgcagaactcgtctccttcctgtgcggtatgatggctgtgtggtcccatggtgtttatactcgtgtttgtacagatgaatgtggtaccttcaggagtttggaaattgctcccaaggatgaaccagacttgtgcaggtgtacaattttttttctgaggtcttgtctgattttttgattttcctatgatgtcaagaaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaattagcctatcagaagcttctaaagccatgacatcattttctggaattttccaagctgtttaaaggcacagtcaacttaatgtatgtaaacttctgacccactggaattgtaatacagtgaattataagtgaaataatctgtctgtaaacaatttttggaaaaatgacttgtcaagcacaaagtagatgtcctaactgacttgccaaaactatagtttgttaacaagaaatttgtggagtggttgaaagactagttttattgactccaacctaagtgtatgtaaacttttgacttcaactgtatgtacgtaACATATCTTTACATAAAGATATTAACTTAATTTAGCTGATTAACTGTCTCAGTACCTTGCCTTGTGTTTTCAGGTAGGTTGTGACCCGGGCTTACAGTAATGACCGGAGAGTAGCATAACATGTCAAGGATTAAGACTGTAAATGATCACATTAAGATGGTTCAACAAAAACAATGTCGATGCATTTTTTAAATGCCTTAATGAGTGGCAGCCTGAGTGCTTATTGAAACTACTACATAAGGCAGTGTGTAGGTAACTGAACTGACATTCAAAACAATAATGTGACAATGTTAGTAATGTTAAGATGTGTAAAACTTTTTTATATGCAATATTTATGGTGACAGGGTTTGAATGTGACATTAGTGGTAGTAGAATACAGTGGTAGTCATAAGGACTTATCAAATGTTCAAGGCAAAGCACTTTAAAGGTTCAAGTTATATAGAACAGACTATATTTATCCAGTCTAGGTAGACCTGTACTTTATCCAGTCTAGGTAGACCTGTACTTTATCCAGTCTAGGTAGACCTGTACTTTATCCAGTCTAGGTAGACCTGTACTTTAGTATGGACGCCTTGTGCCATGACAGGAAGACGGGTGGATGCTATCTTTCACTAATTATGGGAAATAATAGCATGGTAATGAGGAGTTTGGTCTCCCAATATATTATGACTTTCTATTAGTTAGGGCTATTAGGGGGGTTGAATCAGTATGAGTGCCTTCATTTGCCATTGGCACTGTTTAAGTCATCCACTTTCTGATGATCCATTATCTTGATATTCTTCTCAGCATTATCCACGTTCCTTATCAGAGTTTCCAGCCTCCTCTTGATTTTTTTCTGATCTTCCAGGGCGCAGGTGATGACGATCGTCTGGAATTTTGTATCGATAGGAACCGGTGGTGCCTCGGTCACACAGGCAGCGTGCAGTGCCATCAGGCCCTTTCTGGCCCCATCCATGTCATCAAGCAACTTTGCAGCAAGCTCATCAATCAAAGAGGTAGCCTTGCGTAGGGCATCCTCTTGTGTGGAGTTTCTAATGATTTCCACTGATATTTCAACTGTCAGCGTCCTACCCAGAAGACGGTTAGCAGTTAAAGat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930157 lncRNA upstream 71128 33895734 ~ 33895971 (+) True G1687496
TU1930124 lncRNA upstream 97858 33868817 ~ 33869241 (+) True G1687463
TU1930117 lncRNA upstream 103707 33863136 ~ 33863392 (+) True G1687456
TU1930100 lncRNA upstream 112189 33854638 ~ 33854910 (+) True G1687439
TU1929859 lncRNA upstream 277196 33689435 ~ 33689903 (+) True G1687212
TU1930277 lncRNA downstream 50414 34020460 ~ 34020756 (+) True G1687581
TU1930326 lncRNA downstream 241487 34211533 ~ 34211909 (+) True G1687627
TU1930327 lncRNA downstream 242337 34212383 ~ 34212610 (+) True G1687628
TU1930379 lncRNA downstream 355321 34325367 ~ 34325584 (+) True G1687674
TU1930381 lncRNA downstream 356290 34326336 ~ 34326687 (+) True G1687676
XM_036956223.1 mRNA upstream 8371 33949752 ~ 33958728 (+) False rab23
XM_021576451.2 mRNA upstream 8371 33949753 ~ 33958728 (+) False rab23
XM_021576452.2 mRNA upstream 8371 33949753 ~ 33958728 (+) True rab23
XR_005037988.1 mRNA upstream 179585 33661321 ~ 33787514 (+) False LOC110499362
XM_036956221.1 mRNA upstream 191332 33661594 ~ 33775767 (+) False LOC110499362
XM_036956226.1 mRNA downstream 14420 33984466 ~ 34178931 (+) True LOC110499368
XM_021576467.2 mRNA downstream 214034 34184080 ~ 34208986 (+) False zmp:0000000760
XM_021576465.2 mRNA downstream 214035 34184081 ~ 34208986 (+) True zmp:0000000760
XM_036956230.1 mRNA downstream 255825 34225871 ~ 34268321 (+) False col21a1
XM_036956227.1 mRNA downstream 255827 34225873 ~ 34271548 (+) False col21a1
TU1929194 other upstream 781823 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1305451 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4390541 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 4390541 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 4509178 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 355791 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1411663 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1411663 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1711321 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1731174 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile