RNA id: TU1930381


Basic Information

Item Value
RNA id TU1930381
length 352
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1687676
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34326336 ~ 34326687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaccacacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccatagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctttgtaagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggaacctcttaaagaagaagttacaggtctgtgagagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930379 lncRNA upstream 752 34325367 ~ 34325584 (+) True G1687674
TU1930327 lncRNA upstream 113726 34212383 ~ 34212610 (+) True G1687628
TU1930326 lncRNA upstream 114427 34211533 ~ 34211909 (+) True G1687627
TU1930277 lncRNA upstream 305580 34020460 ~ 34020756 (+) True G1687581
TU1930210 lncRNA upstream 356290 33969104 ~ 33970046 (+) False G1687545
TU1930384 lncRNA downstream 2255 34328942 ~ 34329146 (+) True G1687679
TU1930386 lncRNA downstream 5132 34331819 ~ 34332148 (+) True G1687681
TU1930401 lncRNA downstream 23943 34350630 ~ 34354756 (+) True hmgcll1
TU1930437 lncRNA downstream 84131 34410818 ~ 34411022 (+) True G1687730
TU1930438 lncRNA downstream 84503 34411190 ~ 34411410 (+) True G1687731
XM_021576472.2 mRNA upstream 14186 34273867 ~ 34312150 (+) True bmp5
XM_036956233.1 mRNA upstream 54788 34225875 ~ 34271548 (+) False col21a1
XM_021576477.2 mRNA downstream 20467 34347154 ~ 34379366 (+) False hmgcll1
XM_036956235.1 mRNA downstream 23798 34350485 ~ 34354777 (+) False hmgcll1
XM_021576476.2 mRNA downstream 23832 34350519 ~ 34379366 (+) False hmgcll1
XM_036956236.1 mRNA downstream 24223 34350910 ~ 34354777 (+) False hmgcll1
XR_005037989.1 mRNA downstream 172344 34499031 ~ 34503666 (+) True LOC118942064
TU1930380 other upstream 82 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1141060 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1664688 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4749778 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 4749778 29574758 ~ 29576558 (+) True LOC110499316
TU1932015 other downstream 1055022 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1055022 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1354680 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1374533 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1554891 35881578 ~ 35881874 (+) True G1689671

Expression Profile