RNA id: TU1930386


Basic Information

Item Value
RNA id TU1930386
length 330
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1687681
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34331819 ~ 34332148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctgattgagtctgtaataccaacatgtttcaagcagaccaccatagtccctgtgcccaagaacacgaaggcaacctgTCAAAATGACTACAGAaaagtagcactcacgtccatagccatgaagtgctttgaaaggctggtaatggctcacatcaacaccattatcccagaaaccctagacccattccgatttgcataccgcccaaacagatccacagatgatgcaatctctactgcactccacactgccctttcccaactggacaagaggaacacttatgtgagaatgctattcattgactacagctcagcgttcaacaccgtaatac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930384 lncRNA upstream 2673 34328942 ~ 34329146 (+) True G1687679
TU1930381 lncRNA upstream 5132 34326336 ~ 34326687 (+) True G1687676
TU1930379 lncRNA upstream 6235 34325367 ~ 34325584 (+) True G1687674
TU1930327 lncRNA upstream 119209 34212383 ~ 34212610 (+) True G1687628
TU1930326 lncRNA upstream 119910 34211533 ~ 34211909 (+) True G1687627
TU1930401 lncRNA downstream 18482 34350630 ~ 34354756 (+) True hmgcll1
TU1930437 lncRNA downstream 78670 34410818 ~ 34411022 (+) True G1687730
TU1930438 lncRNA downstream 79042 34411190 ~ 34411410 (+) True G1687731
TU1930439 lncRNA downstream 79373 34411521 ~ 34411722 (+) True G1687732
TU1930444 lncRNA downstream 82615 34414763 ~ 34419287 (+) True G1687735
XM_021576472.2 mRNA upstream 19669 34273867 ~ 34312150 (+) True bmp5
XM_036956233.1 mRNA upstream 60271 34225875 ~ 34271548 (+) False col21a1
XM_021576477.2 mRNA downstream 15006 34347154 ~ 34379366 (+) False hmgcll1
XM_036956235.1 mRNA downstream 18337 34350485 ~ 34354777 (+) False hmgcll1
XM_021576476.2 mRNA downstream 18371 34350519 ~ 34379366 (+) False hmgcll1
XM_036956236.1 mRNA downstream 18762 34350910 ~ 34354777 (+) False hmgcll1
XR_005037989.1 mRNA downstream 166883 34499031 ~ 34503666 (+) True LOC118942064
TU1930380 other upstream 5565 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1146543 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1670171 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4755261 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 1049561 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1049561 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1349219 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1369072 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1549430 35881578 ~ 35881874 (+) True G1689671

Expression Profile