RNA id: TU1930438


Basic Information

Item Value
RNA id TU1930438
length 221
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1687731
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34411190 ~ 34411410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttatttgtttctggccattttgagcctgtaatcgaacccacaattgctgatgcttcagatactcaacttgtctaaagaaagccagttgtattgcttctttaatcggaacaacagttttcagctgtgctaatgtagcagtgtgatgttgtTCCCCTAGATTATGCAAATTGCACATAAGGACCAGTTCAAAAAGGCCAGGTCAAAAGGGGATGTTAATAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930437 lncRNA upstream 168 34410818 ~ 34411022 (+) True G1687730
TU1930401 lncRNA upstream 56434 34350630 ~ 34354756 (+) True hmgcll1
TU1930386 lncRNA upstream 79042 34331819 ~ 34332148 (+) True G1687681
TU1930384 lncRNA upstream 82044 34328942 ~ 34329146 (+) True G1687679
TU1930381 lncRNA upstream 84503 34326336 ~ 34326687 (+) True G1687676
TU1930439 lncRNA downstream 111 34411521 ~ 34411722 (+) True G1687732
TU1930444 lncRNA downstream 3353 34414763 ~ 34419287 (+) True G1687735
TU1930575 lncRNA downstream 215308 34626718 ~ 34683245 (+) True G1687845
TU1930610 lncRNA downstream 273283 34684693 ~ 34685476 (+) True LOC110499597
TU1931209 lncRNA downstream 331421 34742831 ~ 34743036 (+) True G1688405
XM_021576477.2 mRNA upstream 31824 34347154 ~ 34379366 (+) False hmgcll1
XM_021576476.2 mRNA upstream 31824 34350519 ~ 34379366 (+) False hmgcll1
XM_036956235.1 mRNA upstream 56413 34350485 ~ 34354777 (+) False hmgcll1
XM_036956236.1 mRNA upstream 56413 34350910 ~ 34354777 (+) False hmgcll1
XM_021576472.2 mRNA upstream 99040 34273867 ~ 34312150 (+) True bmp5
XR_005037989.1 mRNA downstream 87621 34499031 ~ 34503666 (+) True LOC118942064
XM_021576492.2 mRNA downstream 157645 34569055 ~ 34573880 (+) False klhl31
XM_021576491.2 mRNA downstream 157657 34569067 ~ 34573880 (+) True klhl31
XM_021576493.2 mRNA downstream 171906 34583316 ~ 34591320 (+) True gclc
XM_036956241.1 mRNA downstream 183547 34594957 ~ 34606103 (+) True elovl5
TU1930380 other upstream 84936 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1225914 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1749542 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4834632 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 970299 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 970299 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1269957 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1289810 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1470168 35881578 ~ 35881874 (+) True G1689671

Expression Profile