RNA id: TU1930444


Basic Information

Item Value
RNA id TU1930444
length 1592
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1687735
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34414763 ~ 34419287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccccaccaccattttattatgaaTGTGATTTCTTGTAAACCTGATGCAATGACAATTATTCCCATATCAATTACAAGCAGCTGAATGCCTGCATGCATACACTCTGTGAACTTCACATTGAATGATACACTTCCTATGTGATGTGAAAGATTGAGGTGTTGAAGTACTTAGTGACAGTAGGAGCCCTGTCTAATGAAAAGGCATGGTTCAAAAAAGTGTGGTTCAAATAGTCCAGAATCAGTGGAATGCAAAACACAAAAATAATGCTGTGCTCTATTCAACTCATGCTTATATATCACGTTGACTGTGAAATTGTCTTTAGCTTGTCAGAGGAATGGGTTGAATACTAACACATACAACCTGGCCCAAAAATGATTTTGTAGCTTAAACAGACTGAAATAAATACTTCACCTCATGGTGGTACTGTAGGATGCACTTCCCTGTAGCTCATACAACAAAGGATCAAAGGTAACAAAAACACAATGTCACATTTGTTTGGAAAAAGCAACTATATTTTTCAACCAACTTTGTCAGTGTTTGTACAGGTCAAATATTTGACAAACAATGTACATTTCCCTAAATTAGTCCCTCATAATACCACTGCATTTCCCACAACACCTGTCAAATCCAAGCATATTTTGCCAAGACATTGTTCCAAGAAAAATACTCCAGACACTGCAATGATGACAAAAGCGGCATTAGGTTTTGACAAACGAACTCATTCACCCAATCAGGCAATTTACGCACTGTAAATCCTGTACTCTGGATATGTTTTTCTGATATTGTGGCTAACAAATAGATTGTTTTCACTCTTTTGATCAGAGTTGTTATTGTGAAGACATCTTTAAAATGAAATGATTTAATGTGTTTTATATGGAAATGAAGCTACTGCATTATGAATTCCTCCTATTGTAGTTAACTTTTAGTCTCTCGTCACAGCCATCGAGCAGCTGATTGGTTCTGGGTTTAAAAAAAATGCGAATGGCTTTGATATATTATGAAGAATATAGATCTTTGATGTATTAAAGACCAAAAAGCATAACATATTAAAGCACTCTTAGACTTGAAGAGCAAATAAGATGTAACAAATTTGTGTTCAGTGTTTCCCCACACTAAAGtgtacaaacacactcacacacacacaaacacacacttttatCTTACATCTTTTAGTCTTGGACTGAAGACTTATCAacgtcaaggtactggagtgacGAGCCACCCTTTCGGTCTCTGCTTGGCCGGCTCCCCACTCGGATTCCCTGCCGCTGACCACTAATTCCCTTCTAGTTCTGTCTCCCCTACCACAAGGACCTTGGACTGtgcctcaggacaacctggcCTGCCAATTCCTGGCTGTCCCTGTcattggaggctgctgaagggaggacggttcataataatgtctggaacggagcaaatggaatggcatcaaacatgtgtttgatgtattttataccattccactaaatctgctccagccattaccatgaaccctgccaccaacctcctgtggtcccTGTTCACTTGGCCATGCTGCAGATCCGGTTCTGCTGTTTCTGACTGACACTGTGGGCCCCTGACTTGATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930439 lncRNA upstream 3041 34411521 ~ 34411722 (+) True G1687732
TU1930438 lncRNA upstream 3353 34411190 ~ 34411410 (+) True G1687731
TU1930437 lncRNA upstream 3741 34410818 ~ 34411022 (+) True G1687730
TU1930401 lncRNA upstream 60007 34350630 ~ 34354756 (+) True hmgcll1
TU1930386 lncRNA upstream 82615 34331819 ~ 34332148 (+) True G1687681
TU1930575 lncRNA downstream 207431 34626718 ~ 34683245 (+) True G1687845
TU1930610 lncRNA downstream 265406 34684693 ~ 34685476 (+) True LOC110499597
TU1931209 lncRNA downstream 323544 34742831 ~ 34743036 (+) True G1688405
TU1931214 lncRNA downstream 327570 34746857 ~ 34747323 (+) True G1688410
TU1931218 lncRNA downstream 330717 34750004 ~ 34750436 (+) True G1688414
XM_021576477.2 mRNA upstream 35397 34347154 ~ 34379366 (+) False hmgcll1
XM_021576476.2 mRNA upstream 35397 34350519 ~ 34379366 (+) False hmgcll1
XM_036956235.1 mRNA upstream 59986 34350485 ~ 34354777 (+) False hmgcll1
XM_036956236.1 mRNA upstream 59986 34350910 ~ 34354777 (+) False hmgcll1
XM_021576472.2 mRNA upstream 102613 34273867 ~ 34312150 (+) True bmp5
XR_005037989.1 mRNA downstream 79744 34499031 ~ 34503666 (+) True LOC118942064
XM_021576492.2 mRNA downstream 149768 34569055 ~ 34573880 (+) False klhl31
XM_021576491.2 mRNA downstream 149780 34569067 ~ 34573880 (+) True klhl31
XM_021576493.2 mRNA downstream 164029 34583316 ~ 34591320 (+) True gclc
XM_036956241.1 mRNA downstream 175670 34594957 ~ 34606103 (+) True elovl5
TU1930380 other upstream 88509 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1229487 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1753115 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4838205 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 962422 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 962422 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1262080 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1281933 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1462291 35881578 ~ 35881874 (+) True G1689671

Expression Profile