RNA id: TU1931955



Basic Information


Item Value
RNA id TU1931955
length 235
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1689115
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35248908 ~ 35249142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttctacacctgcattgctttctatttggggttttaggctgggtttctttacagcactttgagatatcagctgatgtacgaagggctatataaataaatttgatttgatttgagtaatcTCCTCCACATATTCcaactctcacacactcacatccacacaagcacacacatttaAACAAAACATGGGGGGAAAatggaatgcttagcaggacgggaaaattgtctaattcacataC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1931950 lncRNA upstream 2377 35246272 ~ 35246531 (+) True G1689110
TU1931940 lncRNA upstream 11052 35237588 ~ 35237856 (+) True G1689100
TU1931932 lncRNA upstream 15372 35233201 ~ 35233536 (+) True G1689092
TU1931854 lncRNA upstream 57880 35186019 ~ 35191028 (+) True G1689018
TU1931548 lncRNA upstream 72622 35175707 ~ 35176286 (+) True G1688729
TU1931964 lncRNA downstream 5857 35254999 ~ 35255248 (+) True G1689124
TU1931972 lncRNA downstream 11572 35260714 ~ 35260941 (+) True G1689132
TU1931992 lncRNA downstream 23104 35272246 ~ 35272489 (+) True G1689152
TU1932029 lncRNA downstream 58040 35307182 ~ 35308934 (+) True G1689183
TU1932038 lncRNA downstream 81472 35330614 ~ 35330888 (+) True G1689192
XM_021576507.2 mRNA upstream 69516 34766769 ~ 35179392 (+) True LOC110499391
XR_002469988.2 mRNA upstream 563430 34684614 ~ 34685478 (+) False LOC110499597
XM_021576506.2 mRNA upstream 577478 34656043 ~ 34671430 (+) True LOC110499390
XM_021576502.2 mRNA upstream 618646 34627219 ~ 34630262 (+) False LOC110499387
XM_021576511.2 mRNA downstream 63469 35312611 ~ 35323282 (+) False LOC110499393
XM_021576512.2 mRNA downstream 63507 35312649 ~ 35323282 (+) False LOC110499393
XM_021576510.2 mRNA downstream 63543 35312685 ~ 35323282 (+) False LOC110499393
XM_021576513.2 mRNA downstream 64333 35313475 ~ 35323282 (+) True LOC110499393
XM_021576514.2 mRNA downstream 89307 35338449 ~ 35374027 (+) True LOC110499394
TU1930380 other upstream 922654 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2063632 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2587260 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 5672350 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 132567 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 132567 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 432225 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 452078 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 632436 35881578 ~ 35881874 (+) True G1689671

Expression Profile