RNA id: TU1931964



Basic Information


Item Value
RNA id TU1931964
length 250
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1689124
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35254999 ~ 35255248 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATCAAAATGAATTGgtcacagatttgcagatgttattgcaagtgcagcaaaatgcttgtgtttctaactccaacagtgtagtaatacgCACATAATCCaaaaaagctatgatcccttactgatgtcacttgttaaatcctcttcaatcagtgtagatgaaggggaagagacaggttaaagaattaTTTTTACTTattgagacaattaagacataGATTAtgtatgtttgccattcagagggtgaatgggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1931955 lncRNA upstream 5857 35248908 ~ 35249142 (+) True G1689115
TU1931950 lncRNA upstream 8468 35246272 ~ 35246531 (+) True G1689110
TU1931940 lncRNA upstream 17143 35237588 ~ 35237856 (+) True G1689100
TU1931932 lncRNA upstream 21463 35233201 ~ 35233536 (+) True G1689092
TU1931854 lncRNA upstream 63971 35186019 ~ 35191028 (+) True G1689018
TU1931972 lncRNA downstream 5466 35260714 ~ 35260941 (+) True G1689132
TU1931992 lncRNA downstream 16998 35272246 ~ 35272489 (+) True G1689152
TU1932029 lncRNA downstream 51934 35307182 ~ 35308934 (+) True G1689183
TU1932038 lncRNA downstream 75366 35330614 ~ 35330888 (+) True G1689192
TU1932020 lncRNA downstream 120352 35375600 ~ 35378074 (+) True G1689174
XM_021576507.2 mRNA upstream 75607 34766769 ~ 35179392 (+) True LOC110499391
XR_002469988.2 mRNA upstream 569521 34684614 ~ 34685478 (+) False LOC110499597
XM_021576506.2 mRNA upstream 583569 34656043 ~ 34671430 (+) True LOC110499390
XM_021576502.2 mRNA upstream 624737 34627219 ~ 34630262 (+) False LOC110499387
XM_021576511.2 mRNA downstream 57363 35312611 ~ 35323282 (+) False LOC110499393
XM_021576512.2 mRNA downstream 57401 35312649 ~ 35323282 (+) False LOC110499393
XM_021576510.2 mRNA downstream 57437 35312685 ~ 35323282 (+) False LOC110499393
XM_021576513.2 mRNA downstream 58227 35313475 ~ 35323282 (+) True LOC110499393
XM_021576514.2 mRNA downstream 83201 35338449 ~ 35374027 (+) True LOC110499394
TU1930380 other upstream 928745 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2069723 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2593351 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 5678441 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 126461 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 126461 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 426119 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 445972 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 626330 35881578 ~ 35881874 (+) True G1689671

Expression Profile