RNA id: TU1931968


Basic Information

Item Value
RNA id TU1931968
length 297
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G1689128
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35256655 ~ 35256951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttctaggctattcaaaatcaaatacaaattcccCATTTccaggctattcaaaatcaaatacaaattccccatttctaggctattcaaaatcaaatacaaattccccatttctaggctattcaaaatcaaatacaaattccccatttctaggctattcaaaatcaaatacaaattccccatttctaggctattcaaaatcaattaCAAATTCCCCATTtataggctattcaaaatcaattaCAAATTCCCCAtttctaggctattcaaaatcaaatacaaattccccatttctaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1931967 lncRNA downstream 135 35256317 ~ 35256520 (-) True G1689127
TU1931951 lncRNA downstream 10005 35246272 ~ 35246650 (-) True G1689111
TU1931949 lncRNA downstream 10640 35245785 ~ 35246015 (-) True G1689109
TU1931933 lncRNA downstream 23119 35233300 ~ 35233536 (-) True G1689093
TU1931929 lncRNA downstream 25734 35230694 ~ 35230921 (-) True G1689089
TU1931973 lncRNA upstream 3618 35260569 ~ 35260791 (-) True G1689133
TU1931977 lncRNA upstream 5688 35262639 ~ 35262851 (-) True G1689137
TU1932231 lncRNA upstream 46880 35303831 ~ 35323834 (-) True G1689362
TU1932249 lncRNA upstream 67028 35323979 ~ 35324181 (-) True G1689380
TU1932250 lncRNA upstream 68089 35325040 ~ 35325298 (-) True G1689381
LOC110499538 mRNA downstream 573234 34649274 ~ 34683421 (-) True LOC110499538
XM_021576505.2 mRNA downstream 607691 34636155 ~ 34648964 (-) True LOC110499389
XM_021576504.2 mRNA downstream 622523 34631922 ~ 34634132 (-) True LOC110499388
XM_021576500.2 mRNA downstream 643838 34607155 ~ 34612817 (-) True fbxo9
XM_021576490.2 mRNA downstream 688469 34559396 ~ 34568186 (-) True eloal
XM_036956248.1 mRNA upstream 16263 35273214 ~ 35309946 (-) False LOC110499392
XM_036956247.1 mRNA upstream 16263 35273214 ~ 35310189 (-) True LOC110499392
XM_021576518.2 mRNA upstream 130898 35387849 ~ 35405611 (-) False LOC110499397
XM_021576519.2 mRNA upstream 130898 35387849 ~ 35405611 (-) True LOC110499397
XM_021576524.2 mRNA upstream 172174 35429125 ~ 35432450 (-) True LOC110499399
TU1929638 other downstream 1712417 33543686 ~ 33544238 (-) True G1687007
TU1929645 other downstream 1722379 33533673 ~ 33534276 (-) True LOC110499358
TU1929489 other downstream 2178628 33077810 ~ 33078027 (-) True G1686887
TU1928979 other downstream 2443801 32811707 ~ 32812854 (-) True LOC110499342
TU1927277 other downstream 3843811 31407594 ~ 31412844 (-) True G1684920
TU1931970 other upstream 2038 35258989 ~ 35259818 (-) True G1689130
TU1931971 other upstream 2935 35259886 ~ 35260208 (-) True G1689131
TU1932340 other upstream 221163 35478114 ~ 35480057 (-) True G1689461
TU1932446 other upstream 386417 35643368 ~ 35643777 (-) True G1689556
TU1932874 other upstream 608749 35865700 ~ 35866784 (-) True LOC110499416

Expression Profile