RNA id: TU1932067


Basic Information

Item Value
RNA id TU1932067
length 2208
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1689218
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35418048 ~ 35420255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaaaaacagtgttaaagaaatcaaaatattttagattttagattcttcaaagtagccaccctttgacttcatgacagctttgcacacttttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggcgttcccacatatgctgagcacttgttggctgcttttccttcactctgtggtccaactcatccaaaaccatctcaattgggttgaagttgggtggttgtagaggccaggtcatctgatgcagcactcaatcattctccttcttggtcaaatagcccttacacagcctggaggtgtgctgggctcccaagtggtgcagtattctaaggcactgcatctcagtgcttgaggcatcactacagaccctggttcgattccaggctgtatcacaactggttgtgactgggagtcccatagggacaCAATTGGCACACAATTGGTCcaccgtcgtccgggttagggtttggacggggtaggtcatcattgtaaataagaatttgttcttaactaacttgactagttaaataaaggtgtacacAATCCTATTGAAAACAGATGAtggtcccactaagtgcaaaccagatgagatggtgtatcgctgcagaatgctgtggtggccatgctggttaagtgtgccttgaattctaaataaatcactgacagtgtcaccagcaaagcatcccgacaccatcacacctcctcctccatgcttcatggtgggaaccacacatatggagatcatccgttcacctacaccacgtctcacaaagacacggcggttggaaccaaaaatcttaaatttggactcatcagaccaaaggacagatttccacctctctaatgtccattgctcgtgtttcttggcccaatcaagtatcttcttgttattggtgtcctttagtagtggtttctttgcagcaattaaaccatgaaggcccgattcacacagtctcttctgaacagttgatgttgagatgtgtctgttacttgaactctgtgaagcatttatttgggctgcaatttctgaggctggtaactctaatgaacgtatcctctgccgcaggggtaactctgggtcttcctttcctgtggtggtcctcatgagagccagtttcatcatagagcttcatggtttttgcgactgcacttgaagaaactttcaaagttcttgacattttccatattgactgaccttcatgtcttaaagtaatgatggactgtcgtttctctttgcttttgagctgttcttgccataatatagacttttaccaaatagggctatcttctgtataccacccctaccttgtcataacacaactgattggctcatatgcattaagaaggaaagaaattccacaaatgaacttttaacaaggcacacctgctaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaacactgtctgttttggttactacatgattccatatgtgttattccatagttttgatgtctccacaattattctacaatgaagaaaatagtgtTTTTTTAATATGTAAAAAAactggaatgagttggtgtttccaaacttttgactggtactgtaaattgcTCAATTAGGGCCTATGTATAAGAAAATATTCAAAAACACATCTTTGTATTTTCAAAATATACTTCACTTTCAAAATTAAACAACATCCATGTAGTGCAATAGAAAATGAACATGATCATTATAGAGGGGTTATTTGTTTAGCAAAAACACAGACGCATGAGCagctatggggcaaaacagacggggttgacttagattgttgacaacatgtaagctATATTTTactctccaatgtttattgaaaacataaatacatttgcacaatgagcacttgctGTCTCTCAAatcattgttacagttgttggttagcaaGCTAATGATGtttagccatattagcattgacatgaaatcgaTGCCTCTCTTTGTTCAGGCAGTGCTCGGAGGTCGACGTctccggtcttctagccatctccgatccatttttcattttccatttgtcttgtcttgttttcccacacacctggttctcatttccctcattatgtgttgtgtatttaaccctctgtttaccccatgtctttgtgtggtattgtttattCTGTTCCATGACTGTTGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932087 lncRNA upstream 1322 35415812 ~ 35416726 (+) True G1689237
TU1932078 lncRNA upstream 12434 35400704 ~ 35405614 (+) True G1689229
TU1932061 lncRNA upstream 30212 35387536 ~ 35387836 (+) True G1689215
TU1932060 lncRNA upstream 31451 35386265 ~ 35386597 (+) True G1689214
TU1932016 lncRNA upstream 33482 35381709 ~ 35384566 (+) False LOC110499396
TU1932095 lncRNA downstream 14264 35434519 ~ 35515390 (+) True G1689245
TU1932168 lncRNA downstream 130390 35550645 ~ 35551201 (+) True G1689303
TU1932205 lncRNA downstream 197195 35617450 ~ 35617666 (+) True G1689337
TU1932210 lncRNA downstream 222662 35642917 ~ 35643832 (+) True G1689342
TU1932164 lncRNA downstream 224549 35644804 ~ 35645180 (+) True G1689299
XM_021576521.2 mRNA upstream 116 35410239 ~ 35417932 (+) False LOC110499398
XM_021576520.2 mRNA upstream 315 35410873 ~ 35417733 (+) True LOC110499398
XM_021576516.2 mRNA upstream 33481 35381609 ~ 35384567 (+) False LOC110499396
XM_021576514.2 mRNA upstream 44021 35338449 ~ 35374027 (+) True LOC110499394
XM_021576512.2 mRNA upstream 94766 35312649 ~ 35323282 (+) False LOC110499393
XM_021576525.2 mRNA downstream 18725 35438980 ~ 35446537 (+) False LOC110499400
XM_036956250.1 mRNA downstream 18725 35438980 ~ 35446541 (+) True LOC110499400
XM_021576531.2 mRNA downstream 45380 35465635 ~ 35468940 (+) True kifbp
XM_036956252.1 mRNA downstream 53365 35473620 ~ 35479099 (+) True LOC110499404
XM_021576533.2 mRNA downstream 72359 35492614 ~ 35498474 (+) True LOC110499405
TU1932015 other upstream 33482 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 33482 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1091794 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2232772 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2756400 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 261112 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 280965 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 461323 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 700361 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 844405 36264660 ~ 36264981 (+) False G1690092

Expression Profile