RNA id: TU1932164


Basic Information

Item Value
RNA id TU1932164
length 377
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1689299
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35644804 ~ 35645180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttgaccgttggtatgaggttcttactgtgtttgtttttcgccagacataatgggacccattTCATCCAAAAAGTTGACTTAAGTTTGCCaagaagcacctggatgatcatcattTTCGGGCGgtaaggtagcctagtggttagagcgttggactagtaactggaaggttgcaagttcaaacccctgagctgacaaggtaccaatctgtcattctgccccggAACAgtcagtttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacctgcctagttaaattaaagtacaatttaaaaaatcaagactcttggaagaatgttctatggacagatgattCAAAAGTTGTAACTTTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932210 lncRNA upstream 972 35642917 ~ 35643832 (+) True G1689342
TU1932205 lncRNA upstream 27138 35617450 ~ 35617666 (+) True G1689337
TU1932168 lncRNA upstream 93603 35550645 ~ 35551201 (+) True G1689303
TU1932095 lncRNA upstream 129414 35434519 ~ 35515390 (+) True G1689245
TU1932067 lncRNA upstream 224549 35418048 ~ 35420255 (+) True G1689218
TU1932160 lncRNA downstream 82 35645262 ~ 35645588 (+) True G1689295
TU1932165 lncRNA downstream 523 35645703 ~ 35646183 (+) True G1689300
TU1932159 lncRNA downstream 1887 35647067 ~ 35649366 (+) True G1689294
TU1932226 lncRNA downstream 54069 35699249 ~ 35699456 (+) True G1689357
TU1932213 lncRNA downstream 57033 35702213 ~ 35705279 (+) True G1689345
XM_036956260.1 mRNA upstream 3636 35622634 ~ 35641168 (+) False LOC110499411
XM_036956258.1 mRNA upstream 3636 35624682 ~ 35641168 (+) False LOC110499411
XM_036956259.1 mRNA upstream 3636 35624682 ~ 35641168 (+) False LOC110499411
XR_005037990.1 mRNA upstream 3636 35624682 ~ 35641168 (+) False LOC110499411
XM_036956261.1 mRNA upstream 8190 35624686 ~ 35636614 (+) True LOC110499411
XM_021576543.2 mRNA downstream 6487 35651667 ~ 35662421 (+) False LOC110499412
XM_036956264.1 mRNA downstream 6487 35651667 ~ 35662421 (+) True LOC110499412
XM_036956263.1 mRNA downstream 17328 35662508 ~ 35672943 (+) True LOC110499413
XM_021576546.2 mRNA downstream 30602 35675782 ~ 35679417 (+) False LOC110499414
XM_021576547.2 mRNA downstream 30939 35676119 ~ 35679417 (+) False LOC110499414
TU1932015 other upstream 260238 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 260238 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1318550 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2459528 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2983156 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 36187 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 56040 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 236398 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 475436 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 619480 36264660 ~ 36264981 (+) False G1690092

Expression Profile