RNA id: TU1932160


Basic Information

Item Value
RNA id TU1932160
length 327
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1689295
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35645262 ~ 35645588 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatgaattaagctctgtatcagataattctacaggagaatgtcaggccatctatCTGTGAGCAGAAGCGCAgttgggtcatgcagcaagacaatgatccaaaacacaagcAAGtttacatgaaaatggctaaaaagccacaaatttgaagttttggaatggcctagtcaaagtccagacctaatcagTTGAGatatggcaggacttgaaacgagcagttgatgcttgaaaacccacaaatgtcgctgagttaaagcagttcaaatcaaatttgacttgtcacatgcgccaaatacaaccttacagtaaAGTGCTTactagccctta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932164 lncRNA upstream 82 35644804 ~ 35645180 (+) True G1689299
TU1932210 lncRNA upstream 1430 35642917 ~ 35643832 (+) True G1689342
TU1932205 lncRNA upstream 27596 35617450 ~ 35617666 (+) True G1689337
TU1932168 lncRNA upstream 94061 35550645 ~ 35551201 (+) True G1689303
TU1932095 lncRNA upstream 129872 35434519 ~ 35515390 (+) True G1689245
TU1932165 lncRNA downstream 115 35645703 ~ 35646183 (+) True G1689300
TU1932159 lncRNA downstream 1479 35647067 ~ 35649366 (+) True G1689294
TU1932226 lncRNA downstream 53661 35699249 ~ 35699456 (+) True G1689357
TU1932213 lncRNA downstream 56625 35702213 ~ 35705279 (+) True G1689345
TU1932486 lncRNA downstream 61065 35706653 ~ 35707228 (+) True G1689587
XM_036956260.1 mRNA upstream 4094 35622634 ~ 35641168 (+) False LOC110499411
XM_036956258.1 mRNA upstream 4094 35624682 ~ 35641168 (+) False LOC110499411
XM_036956259.1 mRNA upstream 4094 35624682 ~ 35641168 (+) False LOC110499411
XR_005037990.1 mRNA upstream 4094 35624682 ~ 35641168 (+) False LOC110499411
XM_036956261.1 mRNA upstream 8648 35624686 ~ 35636614 (+) True LOC110499411
XM_021576543.2 mRNA downstream 6079 35651667 ~ 35662421 (+) False LOC110499412
XM_036956264.1 mRNA downstream 6079 35651667 ~ 35662421 (+) True LOC110499412
XM_036956263.1 mRNA downstream 16920 35662508 ~ 35672943 (+) True LOC110499413
XM_021576546.2 mRNA downstream 30194 35675782 ~ 35679417 (+) False LOC110499414
XM_021576547.2 mRNA downstream 30531 35676119 ~ 35679417 (+) False LOC110499414
TU1932015 other upstream 260696 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 260696 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1319008 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2459986 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2983614 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 35779 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 55632 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 235990 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 475028 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 619072 36264660 ~ 36264981 (+) False G1690092

Expression Profile