RNA id: TU1932159


Basic Information

Item Value
RNA id TU1932159
length 2300
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1689294
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35647067 ~ 35649366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaccactggaaatATGCCTACCTTGAAAATGTAAATATTTCCTCAATTTGGTACTTGAAAAGTCCTTGTAATTATTGTAGCCAATTTACAAGTTCTCCTGCTGCCTTATAATGATGCATGATTTCATTTTTGATCTGTTTTTGTGAGAGATGTGGCCACTTTCGTTTGTTTCCTGCTGCTTCAATTGAAGGGTGTTGTGCTACTTACTCTGTTGCGGTAAAACCACGTGCGGTTATTATGAGGACAACAACACGTTGGCTTCAACTTGGCTTTCCATACAAATCCTTTCATTACTAAAGGAACCCATTTCTGGTCGCTTTCTCGTTTTAAAAACAGCAACGGTGAGTGTGAAATGGTGAGATTAATGCTATGGCTATTCATGGATGTACTATCTGTGCCTGCTTCGGCCACAATAGGCTTCAGAAAATCGACATGCATGCATCCAATTTATTTAGTCAGGCACGTCTGTTATGTTTATTCCTTATATAATGACAAACTGGGGCGTAGGTTTAACTACTTTTATACTACTATGTATATGAACATATACTTCAGCTAGAAAACTCCATGTTTAGCCATGCAAGGCATTCTTTAACCATCCAGCCTAGCCTGCTGGGTAACGTAGTCTAAATGTTATTAACGCATAACAACACAACGTCCAAAATTATTCTATGTTAGGCCCTATTTCTACAAATATCCCTAGTGAATTGATGTTGATCATCTGTTGTTTTCTGCTTGATTGAAATtgatattattatttgaccctgctggtcatctatgaacatttgaacatcttggccatgttcttttataatctccaccagcacagccagaagaggactggccacacctcatagcctggttcctctctaggtttcttcctaggttctggcctttctagggagaattcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtacagcacattgtgacatcagctgatgtaagaagggatttataaatacatttgattgattgaatgattgACAGCACTGCCTCCTTAGATTTAAGAAAGAAGGCATCAAGGTAATGAGTTCATGTTTTCTATTTATTTAGTCAGGTATGTCCACATTATTCAATAAATGATACAATTGTATAAAACTAAGGTCCTTGAAAATTGTCATTTTAAATGCTTACAAAATGTATAATCCTAGGCCTATTTTGTTGTATAGGTAGAGTTATGGGCCAATTTGCATGTATTCTTCTAAGTACATGTGGAACTGCATAAAAATACGTTTTATTTTGGTTTCAAACCCTTTTGAAATGTTGATCCCAATGTCACACATGGGCCCCAttgtttatagaaagacccatacATTGCACTGTACACAATTATCTGCACAAAACAGATGAGTTTGAACAAAAAGCTAGGTCATATGAAGTGCTGCTGGACTTCTACGGTGGTCAAACAGTTTAATGTGGGGTGCTTGGACACTACAGGCAAAACAATCAATTGTGTGTCCATAAAACCAGGGTCTAGTCTACTCACTAGAATCCCTAGACTACAAAACAGATGAGTTTGAACAAAAAGCTAGGTCATAGGAAGTGTTGCTAGACTTTTACTGTGGTCAAATAGGTTTTGTGTGTGGCCCCTGGACACTAAATGGTACACACTTAGCACTGTACAGCACTGTTTGTGTCCATAAAACATGGGTCCAGTCTGCACTTTTGTGCTGTCGCTTACTCTTTGTTTGCTTCCAGTGTGAAATAAAATGCCATTTTATGCCAGACTTGCACTGTTGGCTTTGCCCTATAACTGAGGTGACACATTCTGACTATTAGCAGGTGATTAGGTGAGAAGCTAACTGCTTCAGCAAAAACAATGGAAACAATGTGATCAGTAAATGGAGTGTTAACTGTCTGGCATACCTGTAGATGACCTACATTATCCTAATGATGAGAAGACTGCAGACTTCACACATTTAAAGCCAGCCTTACATGCCAAAATATGCACCAGGTCAAGTGTTTGGCGAGACAAATCAATAATATATTTTTGAGGCAGTATCCTAGTGAGATCATGTTGCTACAGGTTAATATCCCTCCAATTATCACATGTATATTTTTCTTAaaattacgtggaaacaatgttgattcaaccagtttgtgcccagtgggctgaCTCTATGAAGAGGATCTTGCATATAATTTGAAACTTCTGTTATACTGATTGATACATTTCAGGAAAAGTATTTGATTAATTAACTTCATTGTGATATTTGTTATGAATAAAGTATGCTTTTTAACCCAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932165 lncRNA upstream 884 35645703 ~ 35646183 (+) True G1689300
TU1932160 lncRNA upstream 1479 35645262 ~ 35645588 (+) True G1689295
TU1932164 lncRNA upstream 1887 35644804 ~ 35645180 (+) True G1689299
TU1932210 lncRNA upstream 3235 35642917 ~ 35643832 (+) True G1689342
TU1932205 lncRNA upstream 29401 35617450 ~ 35617666 (+) True G1689337
TU1932226 lncRNA downstream 49883 35699249 ~ 35699456 (+) True G1689357
TU1932213 lncRNA downstream 52847 35702213 ~ 35705279 (+) True G1689345
TU1932486 lncRNA downstream 57287 35706653 ~ 35707228 (+) True G1689587
TU1932491 lncRNA downstream 60248 35709614 ~ 35709832 (+) True G1689592
TU1932523 lncRNA downstream 79595 35728961 ~ 35729163 (+) True G1689610
XM_036956260.1 mRNA upstream 5899 35622634 ~ 35641168 (+) False LOC110499411
XM_036956258.1 mRNA upstream 5899 35624682 ~ 35641168 (+) False LOC110499411
XM_036956259.1 mRNA upstream 5899 35624682 ~ 35641168 (+) False LOC110499411
XR_005037990.1 mRNA upstream 5899 35624682 ~ 35641168 (+) False LOC110499411
XM_036956261.1 mRNA upstream 10453 35624686 ~ 35636614 (+) True LOC110499411
XM_021576543.2 mRNA downstream 2301 35651667 ~ 35662421 (+) False LOC110499412
XM_036956264.1 mRNA downstream 2301 35651667 ~ 35662421 (+) True LOC110499412
XM_036956263.1 mRNA downstream 13142 35662508 ~ 35672943 (+) True LOC110499413
XM_021576546.2 mRNA downstream 26416 35675782 ~ 35679417 (+) False LOC110499414
XM_021576547.2 mRNA downstream 26753 35676119 ~ 35679417 (+) False LOC110499414
TU1932015 other upstream 262501 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 262501 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1320813 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2461791 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2985419 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 32001 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 51854 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 232212 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 471250 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 615294 36264660 ~ 36264981 (+) False G1690092

Expression Profile