RNA id: TU1932882


Basic Information

Item Value
RNA id TU1932882
length 237
lncRNA type intronic
GC content 0.58
exon number 1
gene id G1689922
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35879037 ~ 35879273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccatcttaccatcctgagacaaggccgagtatagcccacaaagatctccgccacggcacaacccaagggggggcgccaaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932857 lncRNA downstream 33290 35837374 ~ 35845747 (-) True G1689899
TU1932855 lncRNA downstream 38459 35836115 ~ 35840578 (-) True G1689897
TU1932842 lncRNA downstream 73942 35802908 ~ 35805095 (-) True G1689884
TU1932818 lncRNA downstream 127600 35747962 ~ 35751437 (-) True G1689862
TU1932431 lncRNA downstream 175120 35702650 ~ 35703917 (-) True G1689541
TU1932876 lncRNA upstream 2226 35881499 ~ 35881806 (-) True G1689916
TU1932981 lncRNA upstream 151880 36031153 ~ 36037747 (-) True LOC110499423
TU1932978 lncRNA upstream 236665 36115938 ~ 36117169 (-) True LOC118942067
TU1932979 lncRNA upstream 301810 36181083 ~ 36183572 (-) True LOC110499429
TU1933049 lncRNA upstream 307328 36186601 ~ 36187389 (-) False G1690063
XM_036956265.1 mRNA downstream 53013 35819029 ~ 35826024 (-) True LOC110499415
XM_021576538.2 mRNA downstream 311416 35561250 ~ 35567621 (-) False LOC110499408
XM_021576539.2 mRNA downstream 311416 35562370 ~ 35567621 (-) True LOC110499408
XM_021576528.2 mRNA downstream 419292 35446811 ~ 35459745 (-) True LOC110499402
XM_021576529.2 mRNA downstream 419294 35446811 ~ 35459743 (-) False LOC110499402
XM_021576556.2 mRNA upstream 72300 35951573 ~ 35979344 (-) False LOC110499419
XM_021576558.2 mRNA upstream 72300 35951573 ~ 35979345 (-) False LOC110499419
XM_021576554.2 mRNA upstream 72300 35951573 ~ 35979871 (-) False LOC110499419
XM_021576557.2 mRNA upstream 72300 35951573 ~ 35979871 (-) False LOC110499419
XM_036956268.1 mRNA upstream 72300 35951573 ~ 35985098 (-) False LOC110499419
TU1932874 other downstream 12253 35865700 ~ 35866784 (-) True LOC110499416
TU1932446 other downstream 235260 35643368 ~ 35643777 (-) True G1689556
TU1932340 other downstream 398980 35478114 ~ 35480057 (-) True G1689461
TU1931971 other downstream 618829 35259886 ~ 35260208 (-) True G1689131
TU1931970 other downstream 619219 35258989 ~ 35259818 (-) True G1689130
TU1932968 other upstream 241234 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other upstream 241359 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other upstream 241359 36120632 ~ 36125398 (-) True LOC110499427
TU1933425 other upstream 540443 36419716 ~ 36420600 (-) True G1690367
TU1933722 other upstream 823273 36702546 ~ 36703441 (-) True G1690649

Expression Profile