RNA id: TU1932730


Basic Information

Item Value
RNA id TU1932730
length 225
lncRNA type intronic
GC content 0.44
exon number 2
gene id G1689783
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36052148 ~ 36053007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagttgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctttgcgcttttaacggacctctgagactatcacagtgcaggtg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932676 lncRNA upstream 1879 36047198 ~ 36050269 (+) True G1689736
TU1932703 lncRNA upstream 52086 35998695 ~ 36000062 (+) True G1689758
TU1932599 lncRNA upstream 58559 35896215 ~ 35993589 (+) False G1689681
TU1932600 lncRNA upstream 58559 35986956 ~ 35993589 (+) True G1689681
TU1932592 lncRNA upstream 162321 35889601 ~ 35889827 (+) True G1689676
TU1932678 lncRNA downstream 2208 36055215 ~ 36061876 (+) True G1689737
TU1932757 lncRNA downstream 47535 36100542 ~ 36102150 (+) False G1689809
TU1932758 lncRNA downstream 47535 36100542 ~ 36101019 (+) False G1689809
TU1932756 lncRNA downstream 48218 36101225 ~ 36102150 (+) True G1689809
TU1932766 lncRNA downstream 62171 36115178 ~ 36115479 (+) True G1689817
XM_021576562.2 mRNA upstream 6071 36037722 ~ 36046077 (+) True LOC110499422
XM_021576561.2 mRNA upstream 23902 36021099 ~ 36028246 (+) False LOC110499421
XM_021576560.2 mRNA upstream 23902 36022028 ~ 36028246 (+) True LOC110499421
XR_005037991.1 mRNA upstream 76728 35971224 ~ 35975420 (+) True LOC118942065
XR_005038407.1 mRNA upstream 167915 35884180 ~ 35884233 (+) True LOC118942471
XM_036956274.1 mRNA downstream 72496 36125503 ~ 36157782 (+) False LOC110499426
XM_036956281.1 mRNA downstream 72737 36125744 ~ 36155883 (+) False LOC110499426
XM_036956280.1 mRNA downstream 72738 36125745 ~ 36155881 (+) False LOC110499426
XM_036956275.1 mRNA downstream 72739 36125746 ~ 36157782 (+) False LOC110499426
XM_036956277.1 mRNA downstream 72743 36125750 ~ 36155883 (+) False LOC110499426
TU1932587 other upstream 170274 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 350009 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 369711 35681367 ~ 35682437 (+) True G1689347
TU1932015 other upstream 667582 35381709 ~ 35384566 (+) False LOC110499396
TU1932658 other downstream 67609 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 211653 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 222475 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 251932 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 251932 36304939 ~ 36312698 (+) True G1690116

Expression Profile