RNA id: TU1932757


Basic Information

Item Value
RNA id TU1932757
length 413
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1689809
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36100542 ~ 36102150 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatgtagggtgagctatgtccagaatacagtatgtacagcagtagttatgtagggtgagctatgtccagaatacagtatgtacagcagtagttatgtagggtgagctatgtccagaatacagtatgtacagcagtagttatgtagggcgagctatgtccagaatacagtatgtacagcagtagttatgtacggtgagctatgtccagaatacagtatgtacagcagtagttatgtagggtgagctatgtccagaatacagtaggtacagcagtagttatgtagggtgagctatgtccagaatacagtatgtacagcagtagttatgtagggtgagctatgtccagaatacagtatgtacagcagtagttatgtagggtgagctatgtccagaatacagtatgtacagcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932726 lncRNA upstream 9555 36039961 ~ 36090987 (+) True G1689779
TU1932717 lncRNA upstream 15041 36024248 ~ 36085501 (+) True G1689771
TU1932598 lncRNA upstream 34193 35896215 ~ 36066349 (+) False G1689681
TU1932678 lncRNA upstream 38666 36055215 ~ 36061876 (+) True G1689737
TU1932730 lncRNA upstream 47535 36052148 ~ 36053007 (+) True G1689783
TU1932766 lncRNA downstream 13028 36115178 ~ 36115479 (+) True G1689817
TU1932767 lncRNA downstream 13439 36115589 ~ 36115868 (+) True G1689818
TU1932787 lncRNA downstream 57789 36159939 ~ 36160239 (+) True G1689835
TU1932795 lncRNA downstream 83030 36185180 ~ 36185495 (+) True G1689843
TU1932797 lncRNA downstream 86141 36188291 ~ 36188507 (+) True G1689845
XM_021576562.2 mRNA upstream 54465 36037722 ~ 36046077 (+) True LOC110499422
XM_021576561.2 mRNA upstream 72296 36021099 ~ 36028246 (+) False LOC110499421
XM_021576560.2 mRNA upstream 72296 36022028 ~ 36028246 (+) True LOC110499421
XR_005037991.1 mRNA upstream 125122 35971224 ~ 35975420 (+) True LOC118942065
XR_005038407.1 mRNA upstream 216309 35884180 ~ 35884233 (+) True LOC118942471
XM_036956274.1 mRNA downstream 23353 36125503 ~ 36157782 (+) False LOC110499426
XM_036956281.1 mRNA downstream 23594 36125744 ~ 36155883 (+) False LOC110499426
XM_036956280.1 mRNA downstream 23595 36125745 ~ 36155881 (+) False LOC110499426
XM_036956275.1 mRNA downstream 23596 36125746 ~ 36157782 (+) False LOC110499426
XM_036956277.1 mRNA downstream 23600 36125750 ~ 36155883 (+) False LOC110499426
TU1932587 other upstream 218668 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 398403 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 418105 35681367 ~ 35682437 (+) True G1689347
TU1932015 other upstream 715976 35381709 ~ 35384566 (+) False LOC110499396
TU1932658 other downstream 18466 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 162510 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 173332 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 202789 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 202789 36304939 ~ 36312698 (+) True G1690116

Expression Profile