RNA id: TU1933058


Basic Information

Item Value
RNA id TU1933058
length 344
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1690065
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36193653 ~ 36193996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctttactgtgggaattgtgatcaaatcaacgcaatattagccactttcaatgcaacatactgaaacaaaactaactatgcaagagatgTTGTTGTAGGCAGAAGGCAGCAGAGTAGGATTTTATTTAATTGACAGGCACGACTCatgcctgtactctacacagacttgtgcgccataaccaatcagagctgcagtaggcctatatgcaaatagaccattgccgtatgtggatctgtgccattcactttgaactggactgtttttACAGCATGAGCGATCGTGAGTAGATGCGTTtattttgagatcaaagcgagagctaaCGTGCACCCGTTACGTGACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933055 lncRNA downstream 5709 36186601 ~ 36187944 (-) True G1690063
TU1933054 lncRNA downstream 5970 36186601 ~ 36187683 (-) False G1690063
TU1933049 lncRNA downstream 6264 36186601 ~ 36187389 (-) False G1690063
TU1933050 lncRNA downstream 6493 36186601 ~ 36187160 (-) False G1690063
TU1933051 lncRNA downstream 6493 36186601 ~ 36187160 (-) False G1690063
TU1933283 lncRNA upstream 52123 36246119 ~ 36247511 (-) True G1690257
TU1933285 lncRNA upstream 53605 36247601 ~ 36248692 (-) True G1690259
TU1933333 lncRNA upstream 57943 36251939 ~ 36253293 (-) True G1690286
TU1933335 lncRNA upstream 59632 36253628 ~ 36253828 (-) True G1690287
TU1933336 lncRNA upstream 60350 36254346 ~ 36254734 (-) True G1690288
XR_005037994.1 mRNA downstream 68216 36120611 ~ 36125437 (-) False LOC110499427
XM_036956285.1 mRNA upstream 65844 36259840 ~ 36336446 (-) False LOC110499540
XM_036956289.1 mRNA upstream 65844 36259840 ~ 36336446 (-) False LOC110499540
XR_005037999.1 mRNA upstream 65844 36259840 ~ 36336446 (-) False LOC110499540
XM_036956290.1 mRNA upstream 65844 36259840 ~ 36336447 (-) False LOC110499540
XM_036956286.1 mRNA upstream 65844 36259840 ~ 36336450 (-) False LOC110499540
TU1932968 other downstream 68255 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other downstream 68255 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other downstream 68255 36120632 ~ 36125398 (-) True LOC110499427
TU1932874 other downstream 326869 35865700 ~ 35866784 (-) True LOC110499416
TU1932446 other downstream 549876 35643368 ~ 35643777 (-) True G1689556
TU1933425 other upstream 225720 36419716 ~ 36420600 (-) True G1690367
TU1933722 other upstream 508550 36702546 ~ 36703441 (-) True G1690649
TU1933771 other upstream 615703 36809699 ~ 36810143 (-) True G1690696
TU1933942 other upstream 699551 36893547 ~ 36896206 (-) True LOC110499438
TU1934589 other upstream 1044831 37238827 ~ 37239310 (-) True G1691432

Expression Profile