RNA id: TU1933425


Basic Information

Item Value
RNA id TU1933425
length 529
RNA type TUCP
GC content 0.51
exon number 2
gene id G1690367
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36418789 ~ 36420600 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggggtcctggtacagagtcaatgtggaggctatatacagggggtactggtacagagtcaatgtggaggctatatacagggggtcctggtacagagtcaatgtggaggctatatacagggggtactggtactgagtcaatgtggagactatatacagggggtcctggtacagagtcaatgtggaggctatatacagggggtactggtactgagtcaatgtggagactatatacagggggtcctggtacagagtcaatgtggaggctatatacagggggtcctggtacagagtcaatgtggaggctatatacaggggaggtaccggtacagagtcaatgtggaggctatatacagggggtatcggtacagagtcaatgtggaggctatgtacagggggtcctggtacagagtcaatgtggagactatatacagggggtcctggtgcagagtcaatgtggaggctatatacagggggtcctggtacagagtcaatgtggaggctatatacagggggtaccggtactgagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933416 lncRNA downstream 15657 36403777 ~ 36404059 (-) True G1690359
TU1933393 lncRNA downstream 69923 36348424 ~ 36349793 (-) True G1690336
TU1933359 lncRNA downstream 102566 36303795 ~ 36317150 (-) True G1690307
TU1933347 lncRNA downstream 135632 36283787 ~ 36284084 (-) True G1690297
TU1933343 lncRNA downstream 146391 36272993 ~ 36273325 (-) True G1690294
TU1933480 lncRNA upstream 117669 36538269 ~ 36550236 (-) True G1690422
TU1933481 lncRNA upstream 138444 36559044 ~ 36564783 (-) False G1690423
TU1933483 lncRNA upstream 141112 36561712 ~ 36564783 (-) True G1690423
TU1933520 lncRNA upstream 145741 36566341 ~ 36569184 (-) True G1690457
TU1933559 lncRNA upstream 194997 36615597 ~ 36615810 (-) True G1690494
XM_036956292.1 mRNA downstream 32044 36344254 ~ 36387672 (-) False LOC110499433
XM_036956293.1 mRNA downstream 32044 36344254 ~ 36387672 (-) True LOC110499433
XM_036956291.1 mRNA downstream 32047 36344254 ~ 36387669 (-) False LOC110499433
XM_036956287.1 mRNA downstream 83264 36259840 ~ 36336452 (-) False LOC110499540
XM_036956286.1 mRNA downstream 83266 36259840 ~ 36336450 (-) False LOC110499540
XM_021576579.2 mRNA upstream 162934 36583534 ~ 36592764 (-) True LOC110499436
XM_021576581.2 mRNA upstream 471246 36891846 ~ 36896982 (-) False LOC110499438
XM_021576582.2 mRNA upstream 499578 36920178 ~ 36935086 (-) True LOC110499441
XR_005038406.1 mRNA upstream 525666 36946266 ~ 36946381 (-) True LOC118942469
XM_036956298.1 mRNA upstream 635353 37055953 ~ 37197139 (-) False LOC110499443
TU1932968 other downstream 294318 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other downstream 294318 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other downstream 294318 36120632 ~ 36125398 (-) True LOC110499427
TU1932874 other downstream 552932 35865700 ~ 35866784 (-) True LOC110499416
TU1932446 other downstream 775939 35643368 ~ 35643777 (-) True G1689556
TU1933722 other upstream 281946 36702546 ~ 36703441 (-) True G1690649
TU1933771 other upstream 389099 36809699 ~ 36810143 (-) True G1690696
TU1933942 other upstream 472947 36893547 ~ 36896206 (-) True LOC110499438
TU1934589 other upstream 818227 37238827 ~ 37239310 (-) True G1691432
TU1935552 other upstream 2062295 38482895 ~ 38485362 (-) True G1692288

Expression Profile