RNA id: TU1933249


Basic Information

Item Value
RNA id TU1933249
length 515
lncRNA type intronic
GC content 0.41
exon number 3
gene id G1690231
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36556600 ~ 36557674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCATTTTAAGCACTTCTGTTTTGATAGGCAGGTCTTAGACACTTCTGAAAAGCATAGATTTCCTTGTCTTGATTTAAGTGAAATCTTCCCCCTGGAGGTCAAATCGCTCACTTTACATCCCTTCAGCTGTTGACTAGCAGGTTCCGAGGGCCAGCTGTTGATTAGCAGGTTCTGAGGGGCAGGTGTTGATTAGCAGGTTCTGAGGGGCAGGTGTTGATTAGCAGGTTCTGAGGGGCAGCTGTTATACACACACAGTTCTAATAAAGCATGCATTGCCTTCTCGTGATTTATGAAATCTTCACACTGGGGCTGGAAGTCATATATTTCTTGGAAGTCATATATTTCCCAGTACATCTGAGCTGAACTACGTATAGATCTATCTACATtgcattcggagagtattcagaccccttcacttttccacattttgttaccttacagccttattcttattCTGTAACATACAGCCTTATATGTTTTtttcttatcaatctacacacaatacctcacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1933239 lncRNA upstream 21732 36529996 ~ 36534868 (+) True G1690222
TU1933186 lncRNA upstream 144098 36409242 ~ 36412502 (+) True G1690176
TU1933152 lncRNA upstream 206040 36348843 ~ 36350560 (+) True G1690143
TU1933143 lncRNA upstream 210570 36344291 ~ 36346030 (+) True G1690139
TU1933137 lncRNA upstream 221664 36334117 ~ 36334936 (+) True G1690134
TU1933250 lncRNA downstream 1885 36559559 ~ 36560687 (+) True G1690232
TU1933251 lncRNA downstream 2484 36560158 ~ 36560539 (+) True G1690233
TU1933252 lncRNA downstream 7225 36564899 ~ 36602975 (+) True G1690234
TU1933256 lncRNA downstream 9873 36567547 ~ 36569470 (+) True G1690237
TU1933264 lncRNA downstream 25868 36583542 ~ 36592198 (+) True LOC118942015
XM_036956294.1 mRNA upstream 15695 36437205 ~ 36540905 (+) True LOC110499434
XR_005038403.1 mRNA upstream 132739 36423746 ~ 36423861 (+) True LOC118942466
XM_021576572.2 mRNA upstream 309088 36207378 ~ 36247512 (+) True LOC110499432
XM_021576571.2 mRNA upstream 376999 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 385701 36161203 ~ 36170899 (+) True LOC110499428
XM_036955562.1 mRNA downstream 21052 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 138101 36695775 ~ 36809459 (+) False LOC110499541
XM_021576580.2 mRNA downstream 289629 36847303 ~ 36849071 (+) True LOC110499437
XR_005038405.1 mRNA downstream 346156 36903830 ~ 36903945 (+) True LOC118942468
XR_005038001.1 mRNA downstream 348976 36906650 ~ 36909570 (+) False LOC118942068
TU1933112 other upstream 243902 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 243902 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 280657 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 291619 36264660 ~ 36264981 (+) False G1690092
TU1932658 other upstream 431210 36120616 ~ 36125390 (+) True G1689732
TU1933843 other downstream 320377 36878051 ~ 36880738 (+) True G1690753
TU1934277 other downstream 984246 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 1092952 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 1246869 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1664831 38222505 ~ 38222735 (+) True G1691990

Expression Profile